View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_low_44 (Length: 306)

Name: NF1913_low_44
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_low_44
NF1913_low_44
[»] chr1 (1 HSPs)
chr1 (17-306)||(8447263-8447557)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 8447263 - 8447557
Alignment:
Q  17 aatgtcgtgatcttgatatgcaggtacttgaccaaatggctgaaaattaaacaagcaatgtgaaaa-ttatgatgatgactaacataacaacaaggtaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||     ||||||||||    
T  8447263 aatgtcgtgatcttgatatgcaggtacttgaccaaatggctgaaaattaaacaagcaatgtcaaaaattatgatgatgactaaca-----acaaggtaga 8447357  T
Q  116 agaagtgaagtgtatgaatta---------ttattattacatggattttgaggaaatcaggttttctgtgttcagctttggacatgttgagagagatgag 206  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447358 agaagtgaagtgtatgaattattattattattattattacatggattttgaggaaatcaggttttctgtgttcagctttggacatgttgagagagatgag 8447457  T
Q  207 ttggaattggatttctttctcattgagacatgccaacactcttgagacggcggttgacaaggctggtccgtacactttcactggtgtcgccatttcttct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447458 ttggaattggatttctttctcattgagacatgccaacactcttgagacggcggttgacaaggctggtccgtacactttcactggtgtcgccatttcttct 8447557  T

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