View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_45 (Length: 303)
Name: NF1913_low_45
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_45 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 4301513 - 4301252
Alignment:
| Q |
19 |
tatgatattcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaatgagattatatgttctgagctgtacaattctacaatattaa |
118 |
Q |
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| T |
4301513 |
tatgatattcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaatgagattatatgttctgagctgtacaattctacaatattaa |
4301414 |
T |
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| Q |
119 |
attcacaaacaaaatttatatatgatgtttggaaaaatacattgaaaaagctataagtttctatgtcagaatgtatatttcagaccatgaagtgcacgtc |
218 |
Q |
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| T |
4301413 |
attcacaaacaaaatttatatatgatgtttgaaaaaatacattgaaaaagctataagtttctatgtcagaatgtatattttagaccatgaagtgcacgtc |
4301314 |
T |
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| Q |
219 |
taaatgtgccaacctatgttgggtttgtggtataatcaattagatggttatctcttaacgac |
280 |
Q |
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| T |
4301313 |
taaatgtgccaacctatgttgggtttgtggtataatcaattagatggttatctcttaacgac |
4301252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 86953 - 86795
Alignment:
| Q |
18 |
gtatgatattcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaa---tgagattatatgttctgagctgtacaattctacaata |
114 |
Q |
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| T |
86953 |
gtatgatattcttctttataattatatgattacattaggttaacaaaaggaggaaaaaaaaacagagat--tatgttcggagctgtacaattctacaata |
86856 |
T |
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| Q |
115 |
ttaaattcacaaacaaaatttatatatgatgtttggaaaaatacattgaaaaagctataag |
175 |
Q |
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| T |
86855 |
ttaaactcacaaacaaaagttatatatgatgtttggaaaaatacattgaaaaatctataag |
86795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 33099385 - 33099216
Alignment:
| Q |
18 |
gtatgatattcttctttatcattatatgattacattaggttaacaaaaggaggga-----------aaaaatgagattatatgttctgagctgtacaatt |
106 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||| ||||||| ||||||||||||| |
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| T |
33099385 |
gtatgatattcttctttatgattatgtgattacattaggttaacaaaaggaggaagaaaaaaaaaaaaaaaagagagattatgttcggagctgtacaatt |
33099286 |
T |
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| Q |
107 |
ctacaatattaaattcacaaacaaaatttatatatgatgtttggaaaaatacattgaaaaagctataagtt |
177 |
Q |
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| T |
33099285 |
ctacaatattaaactcacaaacaaaagttatatatgatgtttggaaaaatacattg-aaaagctataagtt |
33099216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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