View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_5 (Length: 541)
Name: NF1913_low_5
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 12 - 525
Target Start/End: Complemental strand, 39365584 - 39365062
Alignment:
| Q |
12 |
acagagatgagggtgcacatggattgccctggatgtgaaaacaaagtgaaaactgcacttcagaaaatgaaaggtacctt---------attttgtacat |
102 |
Q |
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| T |
39365584 |
acagagatgagggtgcacatggattgccctggatgtgaaaacaaagtgaaaactgcacttcagaaaatgaaaggtaccttcgtttgcttattttgtacat |
39365485 |
T |
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| Q |
103 |
tttcatcttccttccaagcataaggtaatagtgatcatatgattttttgtatgtatttaaaggtgtggatgacattgaaatagacatgaagttgcaaaag |
202 |
Q |
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| T |
39365484 |
tttcatcttccttccaagcataaggtaatagtgatcatatgattttttgtatttatttaaaggtgtggatgacattgaaatagacatgaagttgcaaaag |
39365385 |
T |
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| Q |
203 |
gtgacggtgaatggttttgctgatcagaagaaggttctaaaaagggttcgaaaaactggacttagggctgagttatggcagcttcctcacacaacagaat |
302 |
Q |
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| T |
39365384 |
gtgacggtgaatggttttgctgatcagaagaaggttctaaaaagggttcgaaaaactggacttagggctgagttatggcagcttcctcacacaacagaat |
39365285 |
T |
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| Q |
303 |
ctcaaagtcaatattatcaacaacacctttgcaatggccctatccctcattatgcttcacaaccttcctcatcttataactaccacaagcatggttatga |
402 |
Q |
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| T |
39365284 |
ctcaaagtcaatattatcaacaacacctttgcaatggccctatccctcattatgcttcacaaccttcctcatcttataactaccacaagcatggttatga |
39365185 |
T |
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| Q |
403 |
tagtagtgatcctagccattatcactatccttctcaatcttcaatctttggccatcaaactggtgctacttttagtgatgacaatcctcatgcttgttct |
502 |
Q |
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| T |
39365184 |
tagtagtgatcctagccattatcactatccttctcaatcttcaatctttggccatcaaactggtgctacttttagtgatgacaatcctcatgcttgttct |
39365085 |
T |
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| Q |
503 |
atcatgtgatcatttcatggtca |
525 |
Q |
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| T |
39365084 |
atcatgtgatcatttcatggtca |
39365062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 525
Target Start/End: Original strand, 32313145 - 32313181
Alignment:
| Q |
489 |
ctcatgcttgttctatcatgtgatcatttcatggtca |
525 |
Q |
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| T |
32313145 |
ctcatgcttggtctattatgtgatcatttcatggtca |
32313181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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