View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_52 (Length: 276)
Name: NF1913_low_52
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 4265721 - 4265971
Alignment:
| Q |
16 |
catctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaag |
115 |
Q |
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| T |
4265721 |
catctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctattttggctcttcaag |
4265820 |
T |
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| Q |
116 |
ttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggctta |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4265821 |
ttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggctta |
4265920 |
T |
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| Q |
216 |
cctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
4265921 |
cctatgtagaaagcttgaaaatgaagtatctgaattagaattacccctttg |
4265971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 4289993 - 4289752
Alignment:
| Q |
25 |
ggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgttt |
124 |
Q |
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|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
4289993 |
ggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccattt |
4289894 |
T |
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| Q |
125 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtag |
224 |
Q |
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| T |
4289893 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtag |
4289794 |
T |
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| Q |
225 |
aaagcttgaaaatgaagtatctgaattagtatcacccctttg |
266 |
Q |
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| T |
4289793 |
aaagcttgaaaatgaagtatctgaattagtatcacccctttg |
4289752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 4260184 - 4260425
Alignment:
| Q |
25 |
ggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgttt |
124 |
Q |
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|||||||||||| || |||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||| |
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| T |
4260184 |
ggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaagcttcttttttggctcttcaagttacttttt |
4260283 |
T |
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| Q |
125 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4260284 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtag |
4260383 |
T |
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| Q |
225 |
aaagcttgaaaatgaagtatctgaattagtatcacccctttg |
266 |
Q |
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| T |
4260384 |
aaagcttgaaattgaagtatctgaattagtattacccctttg |
4260425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 4298577 - 4298352
Alignment:
| Q |
25 |
ggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgttt |
124 |
Q |
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|||||||||| | || |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||| |||| |
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| T |
4298577 |
ggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttatgttttggctcttcaagttaccgttt |
4298478 |
T |
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| Q |
125 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4298477 |
ttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtag |
4298378 |
T |
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| Q |
225 |
aaagcttgaaaatgaagtatctgaat |
250 |
Q |
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||| ||| ||| ||| ||||||||| |
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| T |
4298377 |
aaatattggaaaggaaatatctgaat |
4298352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 4285261 - 4285109
Alignment:
| Q |
27 |
taagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgttttt |
126 |
Q |
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|||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
4285261 |
taagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaagctactgttttggctcttcaagttactgttttt |
4285162 |
T |
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| Q |
127 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
179 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285161 |
ccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
208 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcaccccttt |
265 |
Q |
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| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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