View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_low_54 (Length: 266)

Name: NF1913_low_54
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_low_54
NF1913_low_54
[»] chr3 (2 HSPs)
chr3 (104-255)||(11136430-11136582)
chr3 (13-107)||(11136311-11136405)
[»] scaffold0894 (2 HSPs)
scaffold0894 (104-255)||(35-185)
scaffold0894 (13-107)||(210-304)
[»] scaffold0716 (2 HSPs)
scaffold0716 (104-255)||(7280-7430)
scaffold0716 (22-107)||(7455-7540)
[»] chr2 (2 HSPs)
chr2 (104-255)||(7313910-7314063)
chr2 (20-107)||(7313798-7313885)
[»] scaffold0010 (2 HSPs)
scaffold0010 (104-255)||(246024-246174)
scaffold0010 (13-107)||(246199-246293)
[»] chr7 (2 HSPs)
chr7 (104-255)||(37282024-37282174)
chr7 (13-107)||(37281905-37281999)
[»] chr6 (1 HSPs)
chr6 (196-255)||(11233050-11233109)
[»] chr5 (1 HSPs)
chr5 (196-255)||(40934053-40934112)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 11136430 - 11136582
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaa-catatggtagcgcaatggaacagtagctagtaacacaaatagcaaaa 202  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11136430 attaacaacatgtggtggaaatttcattaatgaatagcagaaaggtttaaaaacatatggtagcgcaatggaacaatagatagtaacacaaatagcaaaa 11136529  T
Q  203 attaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11136530 attaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 11136582  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 11136311 - 11136405
Alignment:
Q  13 aatattaaaaactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  11136311 aatattaaaaactatacactcaggagtgtgcatattatgatgaataaattactaacaaggggaatataacgttataaatctgtccaatattatta 11136405  T

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Target: scaffold0894 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 185 - 35
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaacatatggtagcgcaatggaacagtagctagtaacacaaatagcaaaaa 203  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  185 attaaaaacatgtggtggaaatttcattaatgaatagcagaaaggttta-aacatatggtagtgcaatggaacagtagatagtaacacaaatagcaaaaa 87  T
Q  204 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 35  T

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Target: scaffold0894; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 304 - 210
Alignment:
Q  13 aatattaaaaactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  304 aatattaaaaactatacattcagtagtgtgcatactatgatgaataaattactaacaaggtggatataacgttataaatctttccaatactatta 210  T

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Target: scaffold0716 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 7430 - 7280
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaacatatggtagcgcaatggaacagtagctagtaacacaaatagcaaaaa 203  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  7430 attaaaaacatgtggtggaaatttcattaatgaatagcagaaaggttta-aacatatggtagtgcaatggaacagtagatagtaacacaaatagcaaaaa 7332  T
Q  204 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7331 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 7280  T

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Target: scaffold0716; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 7540 - 7455
Alignment:
Q  22 aactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7540 aactatacattcagtagtgtgcatactatgatgaataaattactaacaaggtggatataacgttataaatctttccaatactatta 7455  T

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Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 7313910 - 7314063
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaa-catatggtagcgcaa-tggaacagtagctagtaacacaaatagcaaa 201  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  7313910 attaacaacatgtggtggaaatttcattaatgaatagcagaaaggtttaaaaacatatggtagcgcaaatggaacagtagatagtaacacaaatagcaaa 7314009  T
Q  202 aattaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314010 aattaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 7314063  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 7313798 - 7313885
Alignment:
Q  20 aaaactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7313798 aaaactatacattcaggagtgtgcatattatgatgaataagttactaacaaggtgaatataacgttataaatctttccaatactatta 7313885  T

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Target: scaffold0010 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 246174 - 246024
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaacatatggtagcgcaatggaacagtagctagtaacacaaatagcaaaaa 203  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  246174 attaaaaacatgtggtggaaatttcattaatgaatagcagaaaggttta-aacatatggtagcgcaatggaacagaagatagtaacacaaatagcaaaaa 246076  T
Q  204 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  246075 ttaaagatctcatgagtggttttaatttggaaactaaatcaaatgcacatat 246024  T

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Target: scaffold0010; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 246293 - 246199
Alignment:
Q  13 aatattaaaaactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  246293 aatattaaaaactatacattcaggattgcgcataatatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatactatta 246199  T

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Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 37282024 - 37282174
Alignment:
Q  104 attaacaacatgtggtggaaacttcattaatgaacagcagaaaggtttagaacatatggtagcgcaatggaacagtagctagtaacacaaatagcaaaaa 203  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  37282024 attaaaaacatgtggtggaaatttcattaatgaatagcagaaaggttta-aacatatggtagcgcaatggaacagaagatagtaacacaaatagcaaaaa 37282122  T
Q  204 ttaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37282123 ttaaagatctcatgagtggttttaatttggaaactaaatcaaatgcacatat 37282174  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 37281905 - 37281999
Alignment:
Q  13 aatattaaaaactatacattcaggagtgtgcatattatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatattatta 107  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37281905 aatattaaaaactatacattcaggattgcgcataatatgatgaataaattactaacaaggtgaatataacgttataaatctttccaatactatta 37281999  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 11233109 - 11233050
Alignment:
Q  196 agcaaaaattaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11233109 agcaaaaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatat 11233050  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 40934112 - 40934053
Alignment:
Q  196 agcaaaaattaaagatctcatgagtggttttaatttggaaactaaatcaaaggcacatat 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40934112 agcaaaaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatat 40934053  T

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