View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_55 (Length: 265)
Name: NF1913_low_55
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7628249 - 7628339
Alignment:
| Q |
1 |
atgtcctgcatcaattgattgcataatttctactgtactacgattttgggagcgactttgcacgtcttgtactagtttcctagttcttaat |
91 |
Q |
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| T |
7628249 |
atgtcctgcatcaattgattgcatagtttctactgtactacgattttgggagcgactttgcacgtcttgtactagtttcctagttcttaat |
7628339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 7628375 - 7628514
Alignment:
| Q |
127 |
ctggagatcaaaacttcataccattaataatgnnnnnnnnnn-ccttagacttggacatnnnnnnnttattcatgggttgtcacacaaaaaccaaattga |
225 |
Q |
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| T |
7628375 |
ctggagatcaaaacttcataccattaataatgaaaaaaaaaaaccttagacttggacataaaaaaattattcatgggttgtcacacaaaaaccaaattga |
7628474 |
T |
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| Q |
226 |
agcatctgaacaatactgtatcaaattgattttacacacc |
265 |
Q |
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| T |
7628475 |
agcatctgaacaatactgcaccaaattgattttacacacc |
7628514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 8936458 - 8936386
Alignment:
| Q |
192 |
ttattcatgggttgtcacacaaaaaccaaattgaagcatctgaacaatactgtatcaaattgattttacacac |
264 |
Q |
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| T |
8936458 |
ttattcaagggttgtcacacaaaaaacaaattcaagcatttcaacgatattgtaccaaattgattttacacac |
8936386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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