View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_56 (Length: 264)
Name: NF1913_low_56
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 40743726 - 40743648
Alignment:
| Q |
169 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtg |
247 |
Q |
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| T |
40743726 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtg |
40743648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 40756242 - 40756164
Alignment:
| Q |
169 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtg |
247 |
Q |
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| T |
40756242 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtg |
40756164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 40756413 - 40756295
Alignment:
| Q |
4 |
aggagttttcatatatttgttataaaaaaatttacnnnnnnnnnn-ataagaatcagaaagnnnnnnnnnnttaaaattgtatcaaataagaagttgtgt |
102 |
Q |
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| T |
40756413 |
aggagttttcatatatttgttataaaaaaatttactttttttttttataagaatcagaaagaaaaaaaaaattaaaattgtatcaaataagaagttgtgt |
40756314 |
T |
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| Q |
103 |
tgagtggcttctcttgaag |
121 |
Q |
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| T |
40756313 |
tgagtagcttctcttgaag |
40756295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 40743816 - 40743778
Alignment:
| Q |
83 |
tatcaaataagaagttgtgttgagtggcttctcttgaag |
121 |
Q |
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| T |
40743816 |
tatcaaataagaagttgttttgagtagcttctcttgaag |
40743778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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