View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_59 (Length: 257)
Name: NF1913_low_59
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 1855412 - 1855642
Alignment:
| Q |
9 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
108 |
Q |
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| T |
1855412 |
agcacagacaacaaattcataacagttggttgtgacagtttcggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
1855511 |
T |
|
| Q |
109 |
gttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855512 |
gttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatat |
1855611 |
T |
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| Q |
209 |
caccatagaagcatttaaattctcaccttct |
239 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
1855612 |
caccatacaagcatttaaattctcaccttct |
1855642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1817770 - 1817549
Alignment:
| Q |
18 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgatt |
117 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| |
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| T |
1817770 |
aacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgatt |
1817671 |
T |
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| Q |
118 |
ttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccataga |
217 |
Q |
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| T |
1817670 |
ttaaacctaaaatagtaattgggaataacactggaaaatgcacaggtttagggtgttgccaagtggatattccttctagtatgaaaaatatcacaattga |
1817571 |
T |
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| Q |
218 |
agcatttaaattctcaccttct |
239 |
Q |
| |
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||||||||||||| || ||||| |
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| T |
1817570 |
agcatttaaattcccaacttct |
1817549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 9220616 - 9220511
Alignment:
| Q |
9 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
108 |
Q |
| |
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||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||| || ||| | | || ||||| || || ||||||||||||| |
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| T |
9220616 |
agcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaagat |
9220517 |
T |
|
| Q |
109 |
gttatg |
114 |
Q |
| |
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|||||| |
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|
| T |
9220516 |
gttatg |
9220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
18 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
65 |
Q |
| |
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||||| ||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 37566880 - 37567123
Alignment:
| Q |
9 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgc-------tta |
101 |
Q |
| |
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||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37566880 |
agcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacagtta |
37566979 |
T |
|
| Q |
102 |
acaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcac------aggtttaggttgttgtgaagttgatattcctccac |
195 |
Q |
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||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||| |||| ||||||||| | |
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| T |
37566980 |
acaagatgttatgattttgatcctaaaatggtaactgggaataacactggaaaatgcacaggcctaggtttagggtgttgccaagtggatattccttcta |
37567079 |
T |
|
| Q |
196 |
ttatgaaaaatatcaccatagaagcatttaaattctcaccttct |
239 |
Q |
| |
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||||||||||||||| || ||| ||||||||||| || ||||| |
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| T |
37567080 |
gtatgaaaaatatcacaattgaaacatttaaattcccaacttct |
37567123 |
T |
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