View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_61 (Length: 255)
Name: NF1913_low_61
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 32942550 - 32942330
Alignment:
| Q |
17 |
taaaatggtgttatgataaaagtatgtatagttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
116 |
Q |
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| T |
32942550 |
taaaatggtgttatgataaaagtat----agttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
32942455 |
T |
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| Q |
117 |
tcagtagcactattcatgagcacatatgttacactgcggtggaataaaaaactacaatttattgtaggttgtctcccaacaaacacgacttattattttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32942454 |
tcagtagcactattcatgagcacatatgttacactgcggtggaagaaaaaactacaatttattgtaggttgtctcc---caaacacgacttattattttt |
32942358 |
T |
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| Q |
217 |
gtacccatcactttattaatttcttcat |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32942357 |
gtacccatcactttattaatttcttcat |
32942330 |
T |
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