View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_63 (Length: 252)
Name: NF1913_low_63
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 41417119 - 41417238
Alignment:
| Q |
1 |
gatgcctaggggattatactccattctctaacaactccacattcattctcctacattaattttcttgtacaaaaaaggtctatattttactcttccaaaa |
100 |
Q |
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| T |
41417119 |
gatgcctaggggattatactccattctctaacaactccacattcattctcctacattaa------tgtacaaaaaaggtcaatattttactcttccaaaa |
41417212 |
T |
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| Q |
101 |
tgtcgtactatagcatcattaattag |
126 |
Q |
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| T |
41417213 |
tgtcgtactataacatcattaattag |
41417238 |
T |
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Back To:
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 41417378 - 41417489
Alignment:
| Q |
121 |
aattagctctttttatccttctacaa-gtttcatttccgctattattagtaagagttaaatcaaacnnnnnnnnggacaatcattttaatcaattccaag |
219 |
Q |
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| T |
41417378 |
aattagctctttttatccttctacaaagtttcatttccactattattagaaagagttaaatcaaacaaaaaaaaggacaatcattttaatcaattccaag |
41417477 |
T |
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| Q |
220 |
agaagttgcaag |
231 |
Q |
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| T |
41417478 |
agaagttgcaag |
41417489 |
T |
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