View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_67 (Length: 250)
Name: NF1913_low_67
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_67 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 41382351 - 41382121
Alignment:
| Q |
13 |
atacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41382351 |
atacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat |
41382252 |
T |
|
| Q |
113 |
tgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41382251 |
tgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccgg |
41382152 |
T |
|
| Q |
213 |
aggtgcatcattgcaaaaatttcacaataca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41382151 |
aggtgcatcattgcaaaaatttcacaataca |
41382121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 43853134 - 43853201
Alignment:
| Q |
25 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
92 |
Q |
| |
|
|||||||| ||||| |||||||| | |||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg |
43853201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 8041736 - 8041966
Alignment:
| Q |
13 |
atacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat |
112 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8041736 |
atacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaat |
8041835 |
T |
|
| Q |
113 |
tgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccgg |
212 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
8041836 |
tagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccgg |
8041935 |
T |
|
| Q |
213 |
aggtgcatcattgcaaaaatttcacaataca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8041936 |
aggtgcatcattgcaaaaatttcacaataca |
8041966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 7971952 - 7971722
Alignment:
| Q |
13 |
atacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat |
112 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7971952 |
atacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaat |
7971853 |
T |
|
| Q |
113 |
tgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccgg |
212 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
7971852 |
tagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccgg |
7971753 |
T |
|
| Q |
213 |
aggtgcatcattgcaaaaatttcacaataca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7971752 |
aggtgcatcattgcaaaaatttcacaataca |
7971722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 8031869 - 8032093
Alignment:
| Q |
25 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatg |
124 |
Q |
| |
|
||||||| ||||||||| || || |||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||| ||||||| || ||||||| |
|
|
| T |
8031869 |
tcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaacatg |
8031968 |
T |
|
| Q |
125 |
cgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcatt |
224 |
Q |
| |
|
||||||| ||||||||||| | | |||||| | |||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031969 |
cgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcatt |
8032068 |
T |
|
| Q |
225 |
gcaaaaatttcacaatacactgtgt |
249 |
Q |
| |
|
|| || || ||||||||| ||||| |
|
|
| T |
8032069 |
gcggaagttccacaatacagtgtgt |
8032093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 7979511 - 7979303
Alignment:
| Q |
22 |
ctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
121 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |||| |
|
|
| T |
7979511 |
ctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaac |
7979412 |
T |
|
| Q |
122 |
atgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatc |
221 |
Q |
| |
|
|||| ||||| |||| ||||| | | |||||| |||||||||||||||||||| || |||| || ||||||| || |||||||| || || |||| |
|
|
| T |
7979411 |
atgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatc |
7979312 |
T |
|
| Q |
222 |
attgcaaaa |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
7979311 |
attgcaaaa |
7979303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 3475 - 3238
Alignment:
| Q |
13 |
atacttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |
|
|
| T |
3475 |
atacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaac |
3376 |
T |
|
| Q |
113 |
tgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccgg |
212 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| | | |||||| |||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3375 |
tgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccgg |
3276 |
T |
|
| Q |
213 |
aggtgcatcattgcaaaaatttcacaatacactgtgtc |
250 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||| |||||| |
|
|
| T |
3275 |
aggtgcatcactgcgaaagttccacaatacagtgtgtc |
3238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 14198910 - 14198715
Alignment:
| Q |
20 |
tcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggcca |
119 |
Q |
| |
|
|||| |||||| ||||||| | ||||| || ||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| |||| || |
|
|
| T |
14198910 |
tcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtca |
14198811 |
T |
|
| Q |
120 |
acatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggagg |
215 |
Q |
| |
|
| |||| |||||||||||||| || ||| ||||| |||| ||||||||| | || |||| || || |||||||||||||||| |||||||| |
|
|
| T |
14198810 |
atatgcttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg |
14198715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University