View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_77 (Length: 238)
Name: NF1913_low_77
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_77 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 31742710 - 31742489
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
31742710 |
acaaacacgcctctccctcttcacaagaatacatcggttttattatggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaa |
31742611 |
T |
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| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
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||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31742610 |
aagtaggcaaactcccaccacttttttccaaaaaatttcgaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
31742511 |
T |
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| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
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|||||| ||||| ||||||||| |
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| T |
31742510 |
gtttaaccatccagtcattctc |
31742489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 5165228 - 5165008
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
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|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
5165228 |
acaaacacacctctcc-tcttcacaagaatacatcagttttattctggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaa |
5165130 |
T |
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| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
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| T |
5165129 |
aagtaggcaaactcccaccacttttttccagaaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttaaatagagtagaaatgaa |
5165030 |
T |
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| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
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| T |
5165029 |
gtttaaacatcccgtcattctc |
5165008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3804726 - 3804930
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
3804726 |
acaaacacgtctctccctcttcacaagaatacataggttttatt----------gtggctattgatattctca-------tttggatttcaaattgaaaa |
3804808 |
T |
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| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804809 |
aagtaggcaaactcccaccacttttttccagaaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
3804908 |
T |
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| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
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| T |
3804909 |
gtttaaacatctagtcattctc |
3804930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 8435255 - 8435121
Alignment:
| Q |
104 |
ttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaata |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8435255 |
ttcaaattgaaaaaagtaggcaaactcccaccactttttttcataaaattcccaccaaaattttgagcaaataaatttttgaaatttcaaattttgaata |
8435156 |
T |
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| Q |
204 |
gagtagaaatgaagtttaaacatccggtcattctc |
238 |
Q |
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| T |
8435155 |
gagtagaaatgaagtttaaacatccagtcattctc |
8435121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27149818 - 27149782
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcgg |
53 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27149818 |
acaaacacgcctctccctcttcacaagaatacatcgg |
27149782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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