View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_80 (Length: 236)
Name: NF1913_low_80
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19789909 - 19790135
Alignment:
| Q |
1 |
tgaaatgtataacaaaatactcaatttacaagtacataaatgtacacttcgtcaatataaagtgacaaatcaaacctgtattgtattattaataccaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19789909 |
tgaaatgtataacaaaatactcaatttacaagtacataaatgtacacttcgtcaatataaagtgacaaatcaaacctgtgttgtattattaataccaatt |
19790008 |
T |
|
| Q |
101 |
atgtttggatcttgacatccaatccatgtgaaaatggaacattctgcatacacaataatcaacaaaggtgtatatgggtttctt----actctatatatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
19790009 |
atgtttggatcttgacatccaatccatgtgaaaatggaacattctgcatacacaataatcaacaaaggtgtatatgggttccttactcactctatatatt |
19790108 |
T |
|
| Q |
197 |
tataccagttcaaaacacaatgtatga |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19790109 |
cataccagttcaaaacacaatgtatga |
19790135 |
T |
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