View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_84 (Length: 235)
Name: NF1913_low_84
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52762547 - 52762769
Alignment:
| Q |
1 |
aaatgtgtttttgttcggaagtaaacattcaaacgaagaaaa-aatgtgctttttatatgtgaaaaaataacacataaggggtgaaaaatgtcgctcccc |
99 |
Q |
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| T |
52762547 |
aaatgtgtttttgttcggaagtaaacattcaaacgaagaaaaaaatgtgctttttatatgtgaaaaaataacacataaggggtgaaaaatgttgctcccc |
52762646 |
T |
|
| Q |
100 |
gtcacttatatgcaatccttatccataatatccaaaatgtgataagaaattacgatatcttagaaagcaaacctttagacaatggctttaatacacaaat |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
52762647 |
gtcacttatttgcaatccttatccataatatccaaaatgtgataagaaattacgatatcttagaaagcaaacttttagacaatggctttattacacaaat |
52762746 |
T |
|
| Q |
200 |
gttttagctcaatatatatgtgt |
222 |
Q |
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|||||||||||||||| |||||| |
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| T |
52762747 |
gttttagctcaatatacatgtgt |
52762769 |
T |
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