View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_86 (Length: 228)
Name: NF1913_low_86
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 21174532 - 21174683
Alignment:
| Q |
47 |
gatattgatatgtaggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaaaaaactc |
146 |
Q |
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| T |
21174532 |
gatattgatttgtaggtggtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaaaaaactc |
21174631 |
T |
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| Q |
147 |
atggctatgcagtttcctacattgcatcatcaaagaaaaccttcatttccac |
198 |
Q |
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| T |
21174632 |
atggctatgcagtttcctacattacatcatcaaagaaaaccttcatttccac |
21174683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 40254076 - 40253991
Alignment:
| Q |
60 |
aggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaaaaaact |
145 |
Q |
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| T |
40254076 |
aggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaact |
40253991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 31941907 - 31941963
Alignment:
| Q |
72 |
atagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacaca |
128 |
Q |
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| T |
31941907 |
atagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacaca |
31941963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 53557698 - 53557778
Alignment:
| Q |
59 |
taggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaa |
139 |
Q |
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| T |
53557698 |
taggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaa |
53557778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 40819510 - 40819420
Alignment:
| Q |
59 |
taggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaaaaaactcatg |
149 |
Q |
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| T |
40819510 |
taggtggtcaattatagctgctcaattaccaggaagaactgataatgatatcaaaaactactggaacacaaaactaaagaagaaactcatg |
40819420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 4686089 - 4686165
Alignment:
| Q |
60 |
aggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaa |
136 |
Q |
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| T |
4686089 |
aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaa |
4686165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 45594342 - 45594286
Alignment:
| Q |
71 |
tatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacac |
127 |
Q |
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| T |
45594342 |
tatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac |
45594286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 39916901 - 39916946
Alignment:
| Q |
82 |
aattgccaggtaggacagacaatgatatcaagaactattggaacac |
127 |
Q |
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| T |
39916901 |
aattgcccggaagaacagacaatgagatcaagaactattggaacac |
39916946 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 5113852 - 5113925
Alignment:
| Q |
54 |
atatgtaggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacac |
127 |
Q |
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| T |
5113852 |
atatgtaggtggtctatcatagcagcacaattaccaggacgaacggataatgatataaagaactactggaacac |
5113925 |
T |
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