View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_9 (Length: 522)
Name: NF1913_low_9
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Original strand, 44956043 - 44956543
Alignment:
| Q |
7 |
tcgaagaatatcctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagt |
106 |
Q |
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| T |
44956043 |
tcgaagaaaaccctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagt |
44956142 |
T |
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| Q |
107 |
ttgttatgtaagaccaaatccatatgaagtgcacaagtgtgtaaataagtgacatatccattgatagaagttagtgcagtttatcgttttttaaattcca |
206 |
Q |
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| T |
44956143 |
ttgttatgtaagaccaaatccatatgaagtgcacaagtgtgtaaataagtgagatatccattgatagaagttagtgcagtttatcgttttttaaattcca |
44956242 |
T |
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| Q |
207 |
tttcctaactgtttcacacttcctccatcaatttcaaaaatattgagaatgcaaccacatacaaagaagcctagaaagttctagagaaagtcatgttggt |
306 |
Q |
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| T |
44956243 |
tttcctaactgtttcacacttcctccatcaatttcaaaaatattgagaatgcaaccacatacaaagaagcctagaaagttctagagaaagtcatgttggt |
44956342 |
T |
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| Q |
307 |
gatgacaactcaagattcaagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatctttgaatatttca |
406 |
Q |
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| T |
44956343 |
gatgacaactcaagattcaagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatctttgaatatttca |
44956442 |
T |
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| Q |
407 |
atagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggttacatatat |
506 |
Q |
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| T |
44956443 |
atagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggttacatatat |
44956542 |
T |
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| Q |
507 |
a |
507 |
Q |
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| T |
44956543 |
a |
44956543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 4309770 - 4309819
Alignment:
| Q |
355 |
caatttgagcttttgcaaatggaactaaatgagaatatctttgaatattt |
404 |
Q |
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| T |
4309770 |
caatatgaacttttgcaaatggaaccaaatgaaaatatttttgaatattt |
4309819 |
T |
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