View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_95 (Length: 204)
Name: NF1913_low_95
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_95 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 10001613 - 10001746
Alignment:
| Q |
42 |
tattagtaatgtatcttacgattcataataagattcaaataccgcgattcagaaaatagttcttttgattcacgatacgaatctc-aatgctcatagtaa |
140 |
Q |
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| T |
10001613 |
tattagtaatgcatcttacgattcataataagattcgattacc-----------aatagttatttcgattcatgatacgaatctctaatgctcatattaa |
10001701 |
T |
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| Q |
141 |
ggaggggtaatgtagagcagtaaaatcactaaccttagtttcagg |
185 |
Q |
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| T |
10001702 |
ggaggggtaatgtagagcagtaaaatcactaaccttagtttcagg |
10001746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 38909308 - 38909276
Alignment:
| Q |
49 |
aatgtatcttacgattcataataagattcaaat |
81 |
Q |
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| T |
38909308 |
aatgtatcttacgattcataataagattcaaat |
38909276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 7295705 - 7295740
Alignment:
| Q |
42 |
tattagtaatgtatcttacgattcataataagattc |
77 |
Q |
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| T |
7295705 |
tattagtaatgtatcttacaattcataataagattc |
7295740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 2402709 - 2402743
Alignment:
| Q |
42 |
tattagtaatgtatcttacgattcataataagatt |
76 |
Q |
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| T |
2402709 |
tattagtaatgtatcttacgattcatagtaagatt |
2402743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 27935506 - 27935449
Alignment:
| Q |
46 |
agtaatgtatcttacgattcataataagattcaaataccgcgattcagaaaatagttctt |
105 |
Q |
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| T |
27935506 |
agtaatgtatcatatgattcataataagattcaatt--cacgtttcagaaaatagttctt |
27935449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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