View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_96 (Length: 202)
Name: NF1913_low_96
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_96 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4301605 - 4301438
Alignment:
| Q |
18 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatcaaacacaaattgggtgataaattaatgtatgaaaaactatgtatgatat |
117 |
Q |
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| T |
4301605 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatcaaacacaaattgggtgataaattaatgtatgaaaaactatatatgatat |
4301506 |
T |
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| Q |
118 |
tcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaatgagattatatgttctg |
185 |
Q |
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| T |
4301505 |
tcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaatgagattatatgttctg |
4301438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 87049 - 86894
Alignment:
| Q |
18 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatcaaacacaaattgg-gtgataaat----taatgtatgaaaaactatgtat |
112 |
Q |
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| T |
87049 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatgaaacacaaattcaagtgataaataaattaatgtgtgaaaaactatgtat |
86950 |
T |
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| Q |
113 |
gatattcttctttatcattatatgattacattaggttaacaaaaggagggaaaaaa |
168 |
Q |
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| T |
86949 |
gatattcttctttataattatatgattacattaggttaacaaaaggaggaaaaaaa |
86894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 33099481 - 33099333
Alignment:
| Q |
18 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatcaaacacaaattgg-gtgataaat----taatgtatgaaaaactatgtat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
33099481 |
agagataccttagctagacagctagcaaggaatcagcaatgtttcataatgaaacacaaattcaagtgataaataaattaatgtgtgaaaaactatgtat |
33099382 |
T |
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| Q |
113 |
gatattcttctttatcattatatgattacattaggttaacaaaaggagg |
161 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
33099381 |
gatattcttctttatgattatgtgattacattaggttaacaaaaggagg |
33099333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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