View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19140_high_4 (Length: 289)
Name: NF19140_high_4
Description: NF19140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19140_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 52631503 - 52631228
Alignment:
| Q |
1 |
cctcactaaattgcacctatactatagagattaaaaagaaagaaatgtaaggtagctagctagagagaagaaagtgagaccgagcagcaagaatcttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631503 |
cctcactaaattgcacctatactatagagattaaaaagaaagaaatctaaggtagctagctagagagaagaaagtgagaccgagcagcaagaatcttctt |
52631404 |
T |
|
| Q |
101 |
ttatctcatttctgcaaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtcaatccacaacacaacgctgctccaagattttgttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631403 |
ttatctcatttctgcaaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtcaatccacaacacaacgctgctccaagattttgttctc |
52631304 |
T |
|
| Q |
201 |
tttggacctagtttcccaacattttttctttctataacccacttttcttattaatcttttctagctaattacatat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631303 |
tttggacctagtttcccaacattttttctttctataacccacttttcttattaatcttttctagctaattacatat |
52631228 |
T |
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