View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19140_high_6 (Length: 266)
Name: NF19140_high_6
Description: NF19140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19140_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 17455047 - 17455239
Alignment:
| Q |
19 |
cattttatggaatgcttgcatgaaaaaaggaatagttatatgcatttacaactactcaaatctgtattcttagcactacgcattagatcaaacaaataga |
118 |
Q |
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| T |
17455047 |
cattttagggaatgcttgcatgaaaaaaggattagttatatgcatttacaactactcaaatctgtattcttagcactacgcattagatcaaacaaataga |
17455146 |
T |
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| Q |
119 |
ccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaaccttgggcagatt |
211 |
Q |
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| T |
17455147 |
ccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaaccttgggcagatt |
17455239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 17461808 - 17461737
Alignment:
| Q |
70 |
ctactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
141 |
Q |
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| T |
17461808 |
ctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
17461737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 17455390 - 17455435
Alignment:
| Q |
206 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaact |
251 |
Q |
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| T |
17455390 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaact |
17455435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 17461704 - 17461661
Alignment:
| Q |
143 |
caagaacagcattgttgaactctccatcacttgatcttggtcat |
186 |
Q |
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| T |
17461704 |
caagaacagcattgttgagctctccatcacttgaccttggtcat |
17461661 |
T |
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