View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19140_high_7 (Length: 221)
Name: NF19140_high_7
Description: NF19140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19140_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 30854508 - 30854320
Alignment:
| Q |
30 |
agttgatttggaacttcgtttgggtttattttagtgagactttgaagcataggtgtcatgcatg----gacaaattaagctggaatctttagacagctag |
125 |
Q |
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| T |
30854508 |
agttgatttggaacttcgtttgggtttatattagtgagactttgaagcataggtgtcatgcatgcatggacaaattaagctggaatctttagacagctag |
30854409 |
T |
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| Q |
126 |
ctttagtctatcaccataatatgtgtcttgtcattgtgtaaacttttccttattttctgttttgttttgaatttgggttgtgatgatgt |
214 |
Q |
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| T |
30854408 |
ctttagtctatcaccataatatgtgtcttgtcattttgtaaacttttccttattttctgttttgttttgaatttgggttgttatgatgt |
30854320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 30878707 - 30878581
Alignment:
| Q |
30 |
agttgatttggaacttcgtttgggtttattttagtgagactttgaagcataggtgtcatg----catggacaaattaagctggaa--tctttagacagct |
123 |
Q |
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| T |
30878707 |
agttgatttggaacttcgtttgggtttgtctaagtgaaactttgaagcataggtgtcatgcatgcatggacaaattaagctagaatctctttagatagct |
30878608 |
T |
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| Q |
124 |
agctttagtctatcaccataatatgtg |
150 |
Q |
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| T |
30878607 |
agctctagtttatcaccataatatgtg |
30878581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 15064172 - 15064349
Alignment:
| Q |
29 |
aagttgatttggaacttcgtttgggtttattttagtgagactttgaagcataggtgt----catgcatggacaaattaagctggaatctttagacagcta |
124 |
Q |
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| T |
15064172 |
aagttgatgtggaacttcgtttcggtttaaattagtgagactttgaagcataggtgtaatgcatgcatggacaaattaagctagaatctctcaacaacta |
15064271 |
T |
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| Q |
125 |
gctttagtctatcaccataatatgtgtcttgtcattgtgtaaacttttcc-ttattttctgttttgttttgaatttgg |
201 |
Q |
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||| |||| |||| |||||||||||||||||||||| | ||| ||||||| || |||||||||||||||||||||||| |
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| T |
15064272 |
gctctagtatatctccataatatgtgtcttgtcattttttaaccttttccttttttttctgttttgttttgaatttgg |
15064349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 15070894 - 15070982
Alignment:
| Q |
29 |
aagttgatttggaacttcgtttgggtttattttagtgagactttgaagcataggtgt----catgcatggacaaattaagctggaatct |
113 |
Q |
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| T |
15070894 |
aagttgatgtggaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcatggacaaattaagctagaatct |
15070982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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