View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19140_low_1 (Length: 464)

Name: NF19140_low_1
Description: NF19140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19140_low_1
NF19140_low_1
[»] chr5 (5 HSPs)
chr5 (192-447)||(34452165-34452419)
chr5 (16-191)||(34451951-34452127)
chr5 (75-124)||(18551501-18551550)
chr5 (75-123)||(27731606-27731654)
chr5 (75-123)||(41015016-41015064)
[»] chr3 (1 HSPs)
chr3 (223-364)||(38410043-38410183)
[»] chr8 (1 HSPs)
chr8 (213-315)||(42388261-42388363)
[»] chr6 (3 HSPs)
chr6 (213-315)||(3189794-3189896)
chr6 (77-129)||(2457210-2457262)
chr6 (75-123)||(29404958-29405006)
[»] chr2 (1 HSPs)
chr2 (75-124)||(28044727-28044776)
[»] chr1 (1 HSPs)
chr1 (75-151)||(11766191-11766265)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 192 - 447
Target Start/End: Original strand, 34452165 - 34452419
Alignment:
Q  192 caattgcagaatcaagttgaccggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagagctgacttctttaagaaggtatgacat 291  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34452165 caattgcagaatcaagctgaccggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagagatgacttctttaagaaggtatgacat 34452264  T
Q  292 agtaaaatcccatggttcaaaaccagctggatgaaaagctacatccatttctttttcaccatttgcttccttcatggatgcaaattcattgatttttaca 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34452265 agtaaaatcccatggttcaaaaccagctggatgaaaagctacatccatttctttttcaccatttgcttccttcatggatgcaaattcattgatttttaca 34452364  T
Q  392 agaaattatttatttgtcatttagtttaatcacatttgtatcgtttgaatcaattg 447  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  34452365 agaaattatttatttg-catttagtttaatcacatttgaatcgtttgaatcaattg 34452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 34451951 - 34452127
Alignment:
Q  16 atagtggtttgattaaatttcgatatgctatagtgttttctgtagctgatattttaca-tactttgtactaaattgcatatcgctaaacaatagcagttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34451951 atagtggtttgattaaatttcgatatgctatagtgttttctgtagctgatattttacaatactttgtactaaattgcatatcgctaaacaatagcagttt 34452050  T
Q  115 tttcaaattcgactatgttatagctgctatttgacaacgtggattaggccacttctgaaattgtgtcgaaagagggt 191  Q
    |||| |||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  34452051 tttcgaatttgactatgttatagctgttatttgacaacgcggattgggccacttctgaaattgtgtcgaaagagggt 34452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 18551501 - 18551550
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattc 124  Q
    |||||||||||||||||||||| | |||||||||| |||| || ||||||    
T  18551501 actttgtactaaattgcatatctcgaaacaatagctgtttgttaaaattc 18551550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 27731606 - 27731654
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 123  Q
    |||||||||||||| |||||||| ||||||||||| |||| || |||||    
T  27731606 actttgtactaaatagcatatcggtaaacaatagcggtttgtttaaatt 27731654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 41015016 - 41015064
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 123  Q
    |||||||||||||| ||||||| |  |||||||||||||| ||||||||    
T  41015016 actttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 364
Target Start/End: Original strand, 38410043 - 38410183
Alignment:
Q  223 aaatccaccaacaaacacaatcccatagaactcttgcaaagagctgacttctttaagaaggtatgacatagtaaaatcccatggttcaaaaccagctgga 322  Q
    ||||||||||||||||||||| |||   |||||||| ||||||   | | | |||||||||| ||||||||||| |||||||||||||||||| || | |    
T  38410043 aaatccaccaacaaacacaattccacgaaactcttgtaaagagaccaatccattaagaaggtctgacatagtaacatcccatggttcaaaaccggcagca 38410142  T
Q  323 tgaaaagctacatccatttctttttcaccatttgcttccttc 364  Q
    ||||| ||| || |||||||| | || ||| |||||||||||    
T  38410143 tgaaatgctgcagccatttctctgtctcca-ttgcttccttc 38410183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 42388261 - 42388363
Alignment:
Q  213 cggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagagctgacttctttaagaaggtatgacatagtaaaatcccatggttcaaa 312  Q
    ||||||| | ||| ||||||||||||||||| |||  ||||||||||||||||   ||  | |||||||||| ||||||||||| |||||| ||||||||    
T  42388261 cggcatagctaaacccaccaacaaacacaattccacggaactcttgcaaagagaccacaccattaagaaggtctgacatagtaacatcccacggttcaaa 42388360  T
Q  313 acc 315  Q
    |||    
T  42388361 acc 42388363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 3189896 - 3189794
Alignment:
Q  213 cggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagagctgacttctttaagaaggtatgacatagtaaaatcccatggttcaaa 312  Q
    ||||||| | ||| ||||||||||||||||| |||  ||||||||||||||||   ||  | |||||||| | ||||||||||| |||||| ||||||||    
T  3189896 cggcatagctaaacccaccaacaaacacaattccacggaactcttgcaaagagaccacaccattaagaagatctgacatagtaacatcccacggttcaaa 3189797  T
Q  313 acc 315  Q
    |||    
T  3189796 acc 3189794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 2457262 - 2457210
Alignment:
Q  77 tttgtactaaattgcatatcgctaaacaatagcagttttttcaaattcgacta 129  Q
    |||||||||||| ||||||| | |||||||||  |||||||||||||| ||||    
T  2457262 tttgtactaaatagcatatcacaaaacaatagtcgttttttcaaattccacta 2457210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 29404958 - 29405006
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 123  Q
    ||||||||||||||  |||||||  ||||||||||| ||||||||||||    
T  29404958 actttgtactaaataacatatcgtgaaacaatagcaattttttcaaatt 29405006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 28044727 - 28044776
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattc 124  Q
    |||||||||||||| ||||||| | ||||||||| ||||| |||||||||    
T  28044727 actttgtactaaatcgcatatcacaaaacaatagtagtttattcaaattc 28044776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 11766191 - 11766265
Alignment:
Q  75 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattcgactatgttatagctgctatttgacaa 151  Q
    |||||||||||||| |||||||   ||||||||||  ||| ||||||||| |||||| ||||||  |||||||||||    
T  11766191 actttgtactaaatagcatatca--aaacaatagctatttgttcaaattctactatgatatagcctctatttgacaa 11766265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University