View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19140_low_2 (Length: 387)
Name: NF19140_low_2
Description: NF19140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19140_low_2 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 38355821 - 38355451
Alignment:
| Q |
1 |
catagcgcttgtgttttacaactagtccatgtaaaattacgggctatgggtttgtccatctggcctaatatttttgcacaaaagtttaagtaagttgggt |
100 |
Q |
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| T |
38355821 |
catagcgcttgtgttttacaactagtccatgtaaaattacgggctatgggtttgtccatctggcctaatatttttgcacaaaagtttaagtaagttgggt |
38355722 |
T |
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| Q |
101 |
tccgggactcaccagttttagttttgacaatgtggttgtgaattgattacagaaggagcttgtggttatggagacattcacaaggttgattatgggaaat |
200 |
Q |
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| T |
38355721 |
tccgggactctccagttttagttttgacaatgtggttgtgaattgattacagaaggagcttgtggttatggagacattcacaaggttgattatgggaaat |
38355622 |
T |
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| Q |
201 |
atagtactgggttaagcacaattttgttcaacaaagggagtacttgtggtgcctgttatgagattagatgtgttgatcacattttatggtgcttgattgg |
300 |
Q |
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| T |
38355621 |
atagtactgggttaagcacaattttgttcaacaaagggagtacttgtggtgcctgttatgagattagatgtgttgatcacattttatggtgcttgattgg |
38355522 |
T |
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| Q |
301 |
aagtccttctgtcgttgttactgttacagatttctgtgctccaaactatggactttcatctgattatggtg |
371 |
Q |
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| T |
38355521 |
aagtccttctgtcgttgttactgttacagatttctgtgctccaaactatggactttcatctgattatggtg |
38355451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 371
Target Start/End: Original strand, 56901 - 57122
Alignment:
| Q |
150 |
cagaaggagcttgtggttatggagacattcacaaggttgattatgggaaatatagtactgggttaagcacaattttgttcaacaaagggagtacttgtgg |
249 |
Q |
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||||||||||||||||||||||||| ||||||| | | ||||| ||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
56901 |
cagaaggagcttgtggttatggagatcttcacaaagctagctatggaaaacatagtgttggattaagcacaattttgttcaacagagggagtacatgtgg |
57000 |
T |
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| Q |
250 |
tgcctgttatgagattagatgtgttgatcacattttatggtgcttgattggaagtccttctgtcgttgttactgttacagatttctgtgctccaaactat |
349 |
Q |
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|| || |||||||| ||||||||||| || || || ||||| || |||||||||||||||| ||||||||| || ||||||||| |||| || | | |
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| T |
57001 |
ggcttgctatgagatcagatgtgttgaccatatcttgtggtgtatgcttggaagtccttctgttattgttactgccactgatttctgtcctcctaatttt |
57100 |
T |
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| Q |
350 |
ggactttcatctgattatggtg |
371 |
Q |
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|| || ||| ||||||||||| |
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| T |
57101 |
ggcctctcagttgattatggtg |
57122 |
T |
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