View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_high_1 (Length: 803)
Name: NF19141_high_1
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_high_1 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 723; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 19 - 796
Target Start/End: Complemental strand, 23180735 - 23179949
Alignment:
| Q |
19 |
attaatgcacacaacatacatatattactttatctacaagcattgcaaatttatataaattaacaaactttactttcagatatatacaccattgagtttc |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180735 |
attaatgcacgcaacatacatatattactttatctacaagcattgcaaatttatataaattaacaaactttactttcagatatatacaccattgagtttc |
23180636 |
T |
|
| Q |
119 |
aaaagaggggattgccacatgcacacatacttatatttctacatccatctaataagctccccgttcctggtgttattgacaagatcatttcagcagagat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23180635 |
aaaagaggggattgccacatgcacacatacttatatttctacatccatctaataagctccccactcctggtgttattgacaagatcatttcagcagagat |
23180536 |
T |
|
| Q |
219 |
acccaatcaggaacatgagaaagagttgtataatttggttaaaaatcatatgatccatggtccatgtggtttatc---------atcaccttgcatgaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23180535 |
acccaatcaggaacatgagaaagagttgtataatttggttaaaaatcatatgatccatggtccatgtggtttatctcataaatcatcaccttgcatgaaa |
23180436 |
T |
|
| Q |
310 |
gatggaaaatgcacaaaatactaccctaagacgtatcagaactcaacaattgttgacaaagaaggttatccagtgtatagacgaagagacaatggtaaca |
409 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
23180435 |
gatggaaaatgcacaaagtactaccctaagaagtatcagaactcaacaattgttgacaaagaaggttatccggtgtacagacgaagagacaatggtaaca |
23180336 |
T |
|
| Q |
410 |
caattgtcaagaatggtgtttcactcaataacaaacatattgtaccatataaccctacgttgctaatgaagtaccaagcacatatcaatgtggaatggtg |
509 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180335 |
caattgtcaagaacggtgtttcactcaataacaaacatattgtaccatataaccctacgttgctaatgaagtaccaagcacatatcaatgtggaatggtg |
23180236 |
T |
|
| Q |
510 |
tagcaaaagtgcatcgattaagtacttattcaagcacataaataaaggttatggtaggataacagccgttgttgatccaacacaagacagagattcaact |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180235 |
tagcaaaagtgcatcgattaagtacttattcaagcacataaataaaggttatggtaggataacagccgttgttgatccaacacaagacagagattcaact |
23180136 |
T |
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| Q |
610 |
caaagtggtaacattgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtc |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180135 |
caaagtggtaacattgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtc |
23180036 |
T |
|
| Q |
710 |
ggaagccagcagttgaaaggttgttctttcatattccaggcgaacaaccggtttactttaacgattatgagcatattgatgatgtcc |
796 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180035 |
ggaagccagcagttgaaaggttgttctttcatattccaggcgaacaaccggtttactttaacgattatgagcatattgatgatgtcc |
23179949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 741
Target Start/End: Complemental strand, 116511 - 116392
Alignment:
| Q |
622 |
attgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcag |
721 |
Q |
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|||||||||||||| ||||| || |||||||||||| | || ||| |||||||| |||||||||| || || |||||||| |||||| | |||||||| | |
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| T |
116511 |
attgatgagatcaagcaatatttagattgtaggtatatttctccaagtgaagcaagttggagaatgttctcttttccaattcatggtagaaagccagcgg |
116412 |
T |
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| Q |
722 |
ttgaaaggttgttctttcat |
741 |
Q |
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| ||| | ||||||||||| |
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| T |
116411 |
tcgaacgtatgttctttcat |
116392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 743
Target Start/End: Complemental strand, 151624 - 151506
Alignment:
| Q |
625 |
gatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttg |
724 |
Q |
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||||| |||||||||||| |||||||||||||| | || ||| ||||||| ||||||||||||| || || ||||| || || || || || ||||||| |
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| T |
151624 |
gatgaaatcaaacaataccttgattgtaggtatatttctccaagtgaagcgtgttggagaatttactctttcccaattcacggccgtaaacctgcagttg |
151525 |
T |
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| Q |
725 |
aaaggttgttctttcatat |
743 |
Q |
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| T |
151524 |
aacggatgttctttcatat |
151506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 743
Target Start/End: Complemental strand, 18060604 - 18060486
Alignment:
| Q |
625 |
gatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttg |
724 |
Q |
| |
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||||| |||||||||||| |||||||||||||| | || ||| ||||||| ||||||||||||| || || ||||| || || || || || ||||||| |
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| T |
18060604 |
gatgaaatcaaacaataccttgattgtaggtatatttctccaagtgaagcgtgttggagaatttactctttcccaattcacggccgtaaacctgcagttg |
18060505 |
T |
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| Q |
725 |
aaaggttgttctttcatat |
743 |
Q |
| |
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|| || ||||||||||||| |
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| T |
18060504 |
aacggatgttctttcatat |
18060486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 708
Target Start/End: Complemental strand, 22065490 - 22065434
Alignment:
| Q |
652 |
aggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggt |
708 |
Q |
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|||||||| || ||| |||||||| |||||||||| |||||||||||||| |||||| |
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| T |
22065490 |
aggtatgtttctccaagtgaagcaagttggagaatgttttcatttccaattcatggt |
22065434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 623 - 687
Target Start/End: Complemental strand, 22072406 - 22072342
Alignment:
| Q |
623 |
ttgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaatt |
687 |
Q |
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||||||| || ||||||||||| |||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
22072406 |
ttgatgaaataaaacaatacttggattgtaggtatatatcaccaagtgaggcatgttggagaatt |
22072342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 623 - 741
Target Start/End: Complemental strand, 124995 - 124877
Alignment:
| Q |
623 |
ttgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagt |
722 |
Q |
| |
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||||||| |||||||| ||| || ||||||| ||||| |||||| |||| |||||||||||||| ||||| || | ||||||||||| || ||||| || |
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| T |
124995 |
ttgatgaaatcaaacagtacatttattgtagatatgtttcaccaagtgaggcatgttggagaatattttctttctccatacatggtcgtaaaccagctgt |
124896 |
T |
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| Q |
723 |
tgaaaggttgttctttcat |
741 |
Q |
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||| | ||||||||||| |
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| T |
124895 |
tgagcgcatgttctttcat |
124877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 15497863 - 15497820
Alignment:
| Q |
103 |
tacaccattgagtttcaaaagaggggattgccacatgcacacat |
146 |
Q |
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||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
15497863 |
tacactattgagtttcaaaagcgaggattgccacatgcacacat |
15497820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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