View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_high_11 (Length: 409)

Name: NF19141_high_11
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_high_11
NF19141_high_11
[»] chr2 (2 HSPs)
chr2 (52-393)||(6049580-6049933)
chr2 (88-181)||(26661215-26661308)
[»] chr1 (4 HSPs)
chr1 (61-393)||(44305806-44306150)
chr1 (214-275)||(22893647-22893708)
chr1 (101-181)||(29845336-29845416)
chr1 (88-163)||(22893499-22893574)
[»] chr4 (1 HSPs)
chr4 (61-362)||(13893814-13894127)
[»] chr7 (3 HSPs)
chr7 (61-181)||(13331864-13331984)
chr7 (61-181)||(13342779-13342899)
chr7 (230-323)||(13331699-13331792)
[»] chr5 (1 HSPs)
chr5 (61-181)||(5672335-5672455)
[»] chr6 (3 HSPs)
chr6 (88-181)||(21481133-21481226)
chr6 (88-182)||(19700882-19700976)
chr6 (214-275)||(19701029-19701090)
[»] chr8 (4 HSPs)
chr8 (88-182)||(32718157-32718251)
chr8 (88-182)||(10637343-10637437)
chr8 (214-272)||(10637492-10637550)
chr8 (214-275)||(32718041-32718102)
[»] scaffold0586 (2 HSPs)
scaffold0586 (94-182)||(9319-9407)
scaffold0586 (214-275)||(9462-9523)
[»] chr3 (3 HSPs)
chr3 (94-181)||(15762307-15762394)
chr3 (11-47)||(33117840-33117876)
chr3 (61-97)||(41416251-41416287)
[»] scaffold0500 (1 HSPs)
scaffold0500 (88-138)||(358-408)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 52 - 393
Target Start/End: Original strand, 6049580 - 6049933
Alignment:
Q  52 ccctatggatgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaat 151  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  6049580 ccctaagggtgtgtttgtttcatggaataaaaatgtattcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaat 6049679  T
Q  152 atgcctaggaatacatttttcccaggaaagcagctcc------------cccacgttccacatattttttctctcttttattcccatctgatagcttggg 239  Q
    |||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6049680 atgcctaggaatacatttttcccaggaaagcagctcccccacgttctcccccacgtcccacatattttttctctcttttattcccatctgatagcttggg 6049779  T
Q  240 aaacttttattcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccg 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049780 aaacttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccg 6049879  T
Q  340 ctaaacattccaccttccctgatcttctataataacccatcatctttgtggtgt 393  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6049880 ctaaacattccaccttccctgatcttctataaaaacccatcatctttgtggtgt 6049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 26661215 - 26661308
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  26661215 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 26661308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 44305806 - 44306150
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44305806 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaag 44305905  T
Q  161 aatacatttttcccaggaaagcagctcccccacgttc------------cacatattttttctctcttttattcccatctgatagcttgggaaactttta 248  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305906 aatacatttttcccaggaaagcagctcccccacgttctcccccacattccacatattttttctctcttttattcccatctgatagcttgggaaactttta 44306005  T
Q  249 ttcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 348  Q
     ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306006 gtcctaggaaatataaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 44306105  T
Q  349 ccaccttccctgatcttctataataacccatcatctttgtggtgt 393  Q
    ||||||||  | ||||||||||| |||||||||||||||||||||    
T  44306106 ccaccttcttttatcttctataaaaacccatcatctttgtggtgt 44306150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 22893647 - 22893708
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 22893708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 29845336 - 29845416
Alignment:
Q  101 taaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||| ||||||| ||| ||||||||||||||| |||| ||| ||||||||| |||||||| ||||| | ||||||||    
T  29845336 taaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttaggaataaattttactcaggaaag 29845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 22893499 - 22893574
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaat 163  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | ||||||    
T  22893499 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 61 - 362
Target Start/End: Complemental strand, 13894127 - 13893814
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894127 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 13894028  T
Q  161 aatacatttttcccaggaaagcagctcccccacgttc------------cacatattttttctctcttttattcccatctgatagcttgggaaactttta 248  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894027 aatacatttttcccaggaaagcagctcccccacgttctcccccacgttccacatattttttctctcttttattcccatctgatagcttgggaaactttta 13893928  T
Q  249 ttcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 348  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13893927 ttcccagaaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattctcgcttttctttctctgtgaactcctcttcccgctaaacatt 13893828  T
Q  349 ccaccttccctgat 362  Q
    ||||||||| ||||    
T  13893827 ccaccttccttgat 13893814  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 13331984 - 13331864
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||| |||    
T  13331984 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccagg 13331885  T
Q  161 aatacatttttcccaggaaag 181  Q
    |||||||||||  ||||||||    
T  13331884 aatacatttttttcaggaaag 13331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 13342899 - 13342779
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||  |||    
T  13342899 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcagg 13342800  T
Q  161 aatacatttttcccaggaaag 181  Q
    |||||||||||  ||||||||    
T  13342799 aatacatttttttcaggaaag 13342779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 13331792 - 13331699
Alignment:
Q  230 atagcttgggaaacttttattcccaggaaatgtaaacccatgatctatt-taaaaagtcatttatgcccctgcaattcccgcttttctttctctg 323  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||    ||||||  ||||| ||||| ||| ||||||||| |||||||||||    
T  13331792 atagcttgggaaagtttcattcccaggaattg-aaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctttctctg 13331699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 5672455 - 5672335
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||  |||    
T  5672455 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcagg 5672356  T
Q  161 aatacatttttcccaggaaag 181  Q
    ||||||||||| |||||||||    
T  5672355 aatacattttttccaggaaag 5672335  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 21481133 - 21481226
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||| ||||| ||||||| || |||||||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||||    
T  21481133 attcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctcaggaaag 21481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 19700882 - 19700976
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | ||||||||| |||||||||||||||    
T  19700882 attccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaagc 19700976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 19701029 - 19701090
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    ||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||    
T  19701029 cttttattcccaagagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 19701090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 32718251 - 32718157
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| |||||||| || |||||||||||||||    
T  32718251 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaagc 32718157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 10637343 - 10637437
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | |||||| || |||||||||||||||    
T  10637343 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 10637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 10637492 - 10637550
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatga 272  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||||    
T  10637492 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatga 10637550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 32718102 - 32718041
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  ||| |||||||||| |||||||||||||||||| |||||||||||||    
T  32718102 cttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatgatct 32718041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 9319 - 9407
Alignment:
Q  94 aggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||  ||| ||||||| | |||||| || |||||||||||||||    
T  9319 aggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 9407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 9462 - 9523
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 9523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 15762394 - 15762307
Alignment:
Q  94 aggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||| ||||||  || ||| ||||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||    
T  15762394 aggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttcccaggaaag 15762307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 33117876 - 33117840
Alignment:
Q  11 ttatactaacaaagaaagtttcagggtatacgctgac 47  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  33117876 ttattctaacaaagaaagttccagggtatacgctgac 33117840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 41416287 - 41416251
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctagga 97  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  41416287 tgtgtttgttacatggaatgaaaatgtattcccagga 41416251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 408 - 358
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgg 138  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  408 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

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