View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_high_2 (Length: 777)

Name: NF19141_high_2
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_high_2
NF19141_high_2
[»] chr5 (26 HSPs)
chr5 (6-611)||(481313-481923)
chr5 (631-727)||(30371586-30371679)
chr5 (667-727)||(10649348-10649408)
chr5 (631-727)||(18677591-18677684)
chr5 (667-727)||(781284-781344)
chr5 (675-727)||(2057963-2058015)
chr5 (50-126)||(9250148-9250224)
chr5 (667-727)||(21060406-21060466)
chr5 (667-727)||(26578144-26578204)
chr5 (665-723)||(7150464-7150522)
chr5 (665-727)||(20257819-20257881)
chr5 (667-727)||(27266985-27267045)
chr5 (672-727)||(43261942-43261997)
chr5 (629-726)||(16981150-16981244)
chr5 (665-723)||(19281073-19281131)
chr5 (631-727)||(36344614-36344707)
chr5 (685-730)||(11767720-11767765)
chr5 (657-749)||(15570794-15570886)
chr5 (694-730)||(19259935-19259971)
chr5 (667-727)||(28235480-28235540)
chr5 (667-727)||(34881605-34881664)
chr5 (667-727)||(35475461-35475521)
chr5 (672-723)||(7241682-7241733)
chr5 (672-723)||(7246858-7246909)
chr5 (692-727)||(30298128-30298163)
chr5 (675-728)||(6445839-6445892)
[»] chr2 (27 HSPs)
chr2 (631-727)||(30420540-30420633)
chr2 (645-749)||(4192714-4192816)
chr2 (631-727)||(36233868-36233961)
chr2 (667-727)||(27249276-27249336)
chr2 (631-723)||(45128068-45128156)
chr2 (667-727)||(6173528-6173588)
chr2 (667-727)||(21570533-21570593)
chr2 (629-727)||(2808595-2808690)
chr2 (631-727)||(459399-459492)
chr2 (631-727)||(3270353-3270446)
chr2 (667-752)||(7015811-7015895)
chr2 (667-727)||(40626152-40626212)
chr2 (665-727)||(26025534-26025597)
chr2 (670-721)||(41430927-41430978)
chr2 (673-727)||(42949616-42949671)
chr2 (673-727)||(27477057-27477111)
chr2 (631-727)||(8971751-8971846)
chr2 (667-723)||(32680711-32680767)
chr2 (667-727)||(32913138-32913198)
chr2 (631-727)||(40660056-40660146)
chr2 (673-748)||(41712870-41712944)
chr2 (694-728)||(18694971-18695005)
chr2 (685-727)||(31581844-31581886)
chr2 (685-727)||(34598902-34598944)
chr2 (631-727)||(3725044-3725137)
chr2 (694-727)||(8805790-8805823)
chr2 (675-728)||(32197918-32197971)
[»] chr4 (36 HSPs)
chr4 (665-748)||(43444295-43444377)
chr4 (631-748)||(38706815-38706928)
chr4 (10-103)||(12081388-12081481)
chr4 (672-728)||(9283820-9283876)
chr4 (631-749)||(21090023-21090138)
chr4 (631-727)||(10359671-10359765)
chr4 (667-727)||(53616776-53616836)
chr4 (635-748)||(2115693-2115802)
chr4 (673-727)||(47416794-47416848)
chr4 (631-727)||(9529003-9529096)
chr4 (631-727)||(34024561-34024654)
chr4 (632-748)||(35965079-35965192)
chr4 (665-749)||(18139016-18139100)
chr4 (665-749)||(49126229-49126313)
chr4 (667-727)||(50766634-50766694)
chr4 (631-752)||(10389854-10389971)
chr4 (665-730)||(5333581-5333646)
chr4 (665-730)||(12265357-12265422)
chr4 (666-727)||(51317889-51317950)
chr4 (631-723)||(56194467-56194559)
chr4 (667-727)||(37188717-37188777)
chr4 (672-727)||(20569161-20569216)
chr4 (693-727)||(29965564-29965598)
chr4 (673-727)||(43154146-43154199)
chr4 (667-728)||(6972713-6972774)
chr4 (665-726)||(4643758-4643821)
chr4 (648-728)||(5333655-5333733)
chr4 (684-727)||(8009484-8009527)
chr4 (631-727)||(1531777-1531871)
chr4 (685-727)||(49680459-49680501)
chr4 (706-747)||(4937757-4937797)
chr4 (631-723)||(9645678-9645767)
chr4 (694-727)||(14183734-14183767)
chr4 (694-727)||(25273811-25273844)
chr4 (694-727)||(49072882-49072915)
chr4 (665-729)||(52098042-52098107)
[»] chr7 (23 HSPs)
chr7 (38-112)||(35208982-35209056)
chr7 (18-125)||(31250533-31250639)
chr7 (635-727)||(46821877-46821966)
chr7 (18-102)||(27661565-27661649)
chr7 (665-727)||(20116473-20116535)
chr7 (631-748)||(26583573-26583686)
chr7 (631-727)||(2843352-2843445)
chr7 (665-746)||(6001911-6001992)
chr7 (667-728)||(23425495-23425556)
chr7 (629-730)||(31235914-31236013)
chr7 (631-727)||(32684544-32684637)
chr7 (673-727)||(21266290-21266344)
chr7 (631-727)||(26492224-26492317)
chr7 (675-727)||(35667356-35667408)
chr7 (667-727)||(48207794-48207854)
chr7 (631-724)||(42311139-42311229)
chr7 (631-727)||(35496300-35496393)
chr7 (631-727)||(46338912-46339005)
chr7 (675-723)||(1485385-1485433)
chr7 (667-723)||(22927999-22928055)
chr7 (667-719)||(42408254-42408306)
chr7 (667-727)||(45199156-45199216)
chr7 (694-727)||(5546278-5546311)
[»] chr1 (33 HSPs)
chr1 (665-727)||(7997681-7997743)
chr1 (631-727)||(20266164-20266258)
chr1 (14-103)||(3190782-3190874)
chr1 (14-103)||(3199600-3199692)
chr1 (14-103)||(3208438-3208530)
chr1 (631-748)||(19716002-19716114)
chr1 (643-723)||(45805938-45806017)
chr1 (631-727)||(30818470-30818563)
chr1 (631-727)||(50148235-50148328)
chr1 (667-727)||(5701153-5701213)
chr1 (667-727)||(25728084-25728144)
chr1 (672-727)||(35584746-35584801)
chr1 (631-727)||(18569435-18569528)
chr1 (631-727)||(30878938-30879031)
chr1 (631-727)||(40646551-40646644)
chr1 (631-727)||(50272265-50272358)
chr1 (667-727)||(14545416-14545476)
chr1 (667-727)||(28035035-28035095)
chr1 (631-727)||(38520658-38520752)
chr1 (631-727)||(45426187-45426281)
chr1 (667-723)||(51868774-51868830)
chr1 (677-728)||(9919295-9919346)
chr1 (648-727)||(27872617-27872695)
chr1 (673-734)||(39987292-39987353)
chr1 (667-727)||(5324682-5324742)
chr1 (667-723)||(25406413-25406469)
chr1 (675-723)||(51871768-51871816)
chr1 (631-728)||(7342585-7342679)
chr1 (631-723)||(9172351-9172440)
chr1 (631-723)||(9180333-9180422)
chr1 (694-727)||(34519056-34519089)
chr1 (631-727)||(40881138-40881231)
chr1 (694-727)||(44637345-44637378)
[»] chr8 (20 HSPs)
chr8 (631-727)||(9619483-9619576)
chr8 (631-727)||(43890250-43890343)
chr8 (631-749)||(11725548-11725662)
chr8 (629-730)||(28239696-28239795)
chr8 (667-727)||(14907049-14907109)
chr8 (631-749)||(33342303-33342418)
chr8 (631-748)||(9498707-9498819)
chr8 (631-727)||(2655735-2655828)
chr8 (667-726)||(42448154-42448213)
chr8 (673-747)||(16794198-16794272)
chr8 (631-727)||(4808830-4808923)
chr8 (631-726)||(44577902-44577994)
chr8 (667-748)||(37565984-37566065)
chr8 (631-727)||(44100057-44100150)
chr8 (631-723)||(9072583-9072672)
chr8 (631-727)||(32724614-32724708)
chr8 (667-727)||(17949146-17949206)
chr8 (631-727)||(35580323-35580417)
chr8 (631-727)||(11196758-11196849)
chr8 (667-749)||(19876111-19876192)
[»] chr6 (17 HSPs)
chr6 (631-727)||(8496824-8496917)
chr6 (631-727)||(23947442-23947535)
chr6 (631-727)||(7876170-7876263)
chr6 (631-727)||(7881228-7881321)
chr6 (631-727)||(12652799-12652892)
chr6 (631-727)||(25064094-25064187)
chr6 (667-727)||(17334667-17334727)
chr6 (631-727)||(8196532-8196624)
chr6 (631-747)||(33543724-33543838)
chr6 (631-748)||(33740683-33740796)
chr6 (631-727)||(33109693-33109786)
chr6 (673-727)||(17237409-17237463)
chr6 (631-727)||(4984703-4984795)
chr6 (673-749)||(4468457-4468532)
chr6 (667-727)||(8028243-8028303)
chr6 (675-723)||(16419058-16419106)
chr6 (667-728)||(10228571-10228632)
[»] chr3 (24 HSPs)
chr3 (667-748)||(36906011-36906091)
chr3 (49-149)||(22507888-22507987)
chr3 (631-727)||(32607324-32607417)
chr3 (631-727)||(4178421-4178514)
chr3 (631-727)||(44907524-44907617)
chr3 (631-727)||(46934499-46934592)
chr3 (667-727)||(14464397-14464457)
chr3 (667-726)||(25162326-25162385)
chr3 (631-727)||(12115950-12116043)
chr3 (673-730)||(22802917-22802974)
chr3 (631-727)||(25631652-25631745)
chr3 (632-727)||(35499326-35499419)
chr3 (675-748)||(50611522-50611594)
chr3 (667-723)||(3850584-3850640)
chr3 (672-749)||(46178471-46178548)
chr3 (631-723)||(49552352-49552441)
chr3 (675-727)||(4172464-4172516)
chr3 (667-727)||(29503352-29503412)
chr3 (667-727)||(38440702-38440762)
chr3 (675-727)||(38855162-38855214)
chr3 (676-727)||(2342390-2342441)
chr3 (665-723)||(21487999-21488057)
chr3 (695-748)||(17237720-17237772)
chr3 (667-752)||(39917497-39917581)
[»] scaffold0311 (1 HSPs)
scaffold0311 (673-727)||(8618-8672)
[»] scaffold0003 (1 HSPs)
scaffold0003 (631-727)||(361921-362012)
[»] scaffold0495 (1 HSPs)
scaffold0495 (667-728)||(5290-5351)
[»] scaffold0146 (1 HSPs)
scaffold0146 (695-748)||(16427-16479)
[»] scaffold0014 (1 HSPs)
scaffold0014 (694-727)||(201496-201529)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 6 - 611
Target Start/End: Original strand, 481313 - 481923
Alignment:
Q  6 tagataatactgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgca 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  481313 tagatgatactgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgca 481412  T
Q  106 ttcatgcatatttcaacacttttgagagagtcgagcctagggattatttgcagggttacatggaggttaggtcgatagtggccggtgatcaagtggagta 205  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  481413 ttcatgcatatttcaacacttg-gagagagtcgagcctagggattatttgcagggttacatggaggttaggccgatagtggccggtgatcaagtggagta 481511  T
Q  206 ggaaagttcaatttgaaaaggttagatattcacgaactaactagaattgtttgcc-tttagaaactaatatcgatatatgatt--nnnnnnnnttccctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          |||||||    
T  481512 ggaaagttcaatttgaaaaggttagatattcacgaactaactagaattgtttgccatttagaaactaatatcgatatatgattaaaaaataaattccctc 481611  T
Q  303 ataccaaatttgaacggttttaacgggtatgtgacctgaaactcttaagccagtagccagagttcgatcacatttgtacatataacattataacaatttt 402  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  481612 atactaaatttgaacggttttaacgggtatgtgacctgaaactcttaagccagtagccagagttcgatcacatttgtacatataacattataacaatttt 481711  T
Q  403 tattaacctcacattatcttttacaaacgctctaatctcacctttaaaatatacaaacctacagtaacaatattgaagcattttccattccatatcagac 502  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  481712 tattaacctcacattatcttttacaaacgctctaatctcaccttaaaaatatacaaacccacagtaacaatcttgaagcattttccattccatatcagac 481811  T
Q  503 tattagtaagaaaaaatcacataagtaaacataaga---aagnnnnnnnnnttactctccttcattgnnnnnnntccttatttattgaagaactcctttc 599  Q
    |||||||||||||||| ||||  |||||||||||||   |||         ||||||||||||||||       ||||||||||||||||||||||||||    
T  481812 tattagtaagaaaaaaccacactagtaaacataagaaagaagaaaaaaaaattactctccttcattgaaaaaagtccttatttattgaagaactcctttc 481911  T
Q  600 aattagtaagaa 611  Q
    ||||||||||||    
T  481912 aattagtaagaa 481923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 30371586 - 30371679
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||   ||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  30371586 tttcttcattgaggggtg--gttttgg-gtcaatatttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 30371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 10649348 - 10649408
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  10649348 ttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 10649408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 18677684 - 18677591
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||||||||||||| || ||||| || |||||||| ||||| |||||||||||||||||||    
T  18677684 tttcttcattgaggggtg--gttttgg-gtcaattattgatctgaaatcatccctcttcatctttttctctctattttaatctaaataagtgatttt 18677591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 781284 - 781344
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  781284 ttgacctgaaatcacccatcttcatctttttctctatatttcaatctaaataagtgatttt 781344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 675 - 727
Target Start/End: Complemental strand, 2058015 - 2057963
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2058015 aaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 2057963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 9250224 - 9250148
Alignment:
Q  50 taaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaacactt 126  Q
    ||||||| |||||||| ||||||||||||||||| |||||| |||||||| |||||| |||| | |||||| |||||    
T  9250224 taaatgtcaaacatgtaatattatgtgttgtttattgattagtatatgttaatgcatgcatgaacatttcagcactt 9250148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 21060466 - 21060406
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  21060466 ttgatctgaaatcaccactcttcatctttttctctatatttcaatctaaataagtgatttt 21060406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 26578144 - 26578204
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  26578144 ttgacctgaaatcactcatcttcatctttttctctttatttcaatctaaataagtgatttt 26578204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 7150522 - 7150464
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  7150522 ttttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga 7150464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 727
Target Start/End: Complemental strand, 20257881 - 20257819
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||| ||||||||| || ||| |||| |||||||| |||||||||||||||||||||||||    
T  20257881 ttttgacctgaaatcatccatctacttctttttctctctatttcaatctaaataagtgatttt 20257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 27267045 - 27266985
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| |  |||||||| |||||||||||||||||||||||||    
T  27267045 ttgacctgaaatcacccctcttcatatttttctctctatttcaatctaaataagtgatttt 27266985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 43261997 - 43261942
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||| ||||| || |||| ||| |||||||||||||||||||||||||    
T  43261997 ctgaaatcacccatcttcatctttttatctctatttcaatctaaataagtgatttt 43261942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 726
Target Start/End: Original strand, 16981150 - 16981244
Alignment:
Q  629 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 726  Q
    ||||||||||||||||||||  || ||||| |||  | |||| |||||||||| | ||||| |  |||||||| ||||||||||||||||||||||||    
T  16981150 attttcttcattgaggggtg--gtattgga-tcaattcttgacctgaaatcactcctcttcatatttttctctctatttcaatctaaataagtgattt 16981244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 19281131 - 19281073
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||| | |||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  19281131 ttttgaccggaaatcacccatcttcatctttttctctctatttcaatctaaataagtga 19281073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 36344707 - 36344614
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||| |||| |||| |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  36344707 tttcttcattgaggggtg--gttttg-agtc-gattcttgacctaaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 36344614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 730
Target Start/End: Original strand, 11767720 - 11767765
Alignment:
Q  685 tcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||    
T  11767720 tcttcatctttttctctatatttcaatctaaataagtgatttttca 11767765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 749
Target Start/End: Original strand, 15570794 - 15570886
Alignment:
Q  657 gagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    ||||||| ||||||  |||||||| || ||||| || |||||||| || |||||||||||||  |||||||||| ||| ||  ||||||||||    
T  15570794 gagtcagtttttgacttgaaatcatccctcttcatctttttctctataattcaatctaaatatttgatttttcacatagatgtaggttttttc 15570886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 730
Target Start/End: Complemental strand, 19259971 - 19259935
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttttca 730  Q
    |||||||| ||||||||||||||||||||||||||||    
T  19259971 ttttctctctatttcaatctaaataagtgatttttca 19259935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 28235480 - 28235540
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||| | |||||| ||||||||||||||||||    
T  28235480 ttgacctgaaatcacccctcttcatctttttctttctatttcgatctaaataagtgatttt 28235540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 34881605 - 34881664
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  34881605 ttgacctgaaatcacctctcttcatc-ttttctctctatttcaatctaaataagtgatttt 34881664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 35475521 - 35475461
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||  ||||| || | || ||| |||||||||||||||||||||||||    
T  35475521 ttgatctgaaatcacctctcttcatcttgttatctatatttcaatctaaataagtgatttt 35475461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 723
Target Start/End: Original strand, 7241682 - 7241733
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||| ||||| ||||| || |||||||| |||||||||||||||||||||    
T  7241682 ctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtga 7241733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 723
Target Start/End: Original strand, 7246858 - 7246909
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||| ||||| ||||| || |||||||| |||||||||||||||||||||    
T  7246858 ctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtga 7246909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 727
Target Start/End: Original strand, 30298128 - 30298163
Alignment:
Q  692 cgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||| |||||||||||||||||||||||||    
T  30298128 cgttttctctatatttcaatctaaataagtgatttt 30298163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 6445839 - 6445892
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    ||||||||| ||||| ||||||||||| ||| | ||| ||||||||||||||||    
T  6445839 aaatcacccatcttcatcgttttctctctatcttaatttaaataagtgattttt 6445892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 30420540 - 30420633
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||||| |||  |||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  30420540 tttcttcattgaggggtg--gttttgga-tcaatttttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 30420633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 645 - 749
Target Start/End: Original strand, 4192714 - 4192816
Alignment:
Q  645 ggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtt 744  Q
    |||||||||||||| |||  |||||| |||| ||||||| ||||| || |||||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  4192714 ggtgtggttttgga-tcaatttttgacctgagatcacccctcttcatctttttctctatatttcaatctaaataagtga-ttttcacatatatttaggtt 4192811  T
Q  745 ttttc 749  Q
    |||||    
T  4192812 ttttc 4192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 36233868 - 36233961
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  |  ||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  36233868 tttcttcattgaggggtg--gttttgg-gtcaattcatgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 36233961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 27249336 - 27249276
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  27249336 ttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 27249276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 45128068 - 45128156
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||||||||||||   ||||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  45128068 tttcttcattgaggg---tggttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtga 45128156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 6173528 - 6173588
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  6173528 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgatttt 6173588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 21570593 - 21570533
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  21570593 ttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgatttt 21570533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 727
Target Start/End: Complemental strand, 2808690 - 2808595
Alignment:
Q  629 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| ||  ||||||| ||||||| |||||||||||||||||    
T  2808690 attttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctatttctctctatttcagtctaaataagtgatttt 2808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 459492 - 459399
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  |||||| |||||||||||| ||||| || |||||||| ||||||| | |||||||| ||||||    
T  459492 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctgaaatcacccctcttcatccttttctctctatttcattttaaataagcgatttt 459399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 3270446 - 3270353
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||| | | ||| || |||||| |||||||||||||||||||||||||||    
T  3270446 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcattttcatctttttctttttatttcaatctaaataagtgatttt 3270353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 667 - 752
Target Start/End: Complemental strand, 7015895 - 7015811
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttcctt 752  Q
    |||| |||||||||||| || |  || |||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||    
T  7015895 ttgacctgaaatcacccctcctaatctttttctctttatttcaatctaaataattga-ttttcacatagatttaggttttttcctt 7015811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 40626212 - 40626152
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||| ||||||    
T  40626212 ttgacctgaaatcacccctcttcgtctttttctctctatttcaatctaaataagggatttt 40626152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 665 - 727
Target Start/End: Complemental strand, 26025597 - 26025534
Alignment:
Q  665 ttttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||||  ||||| || |||||||| |||||||||||||||||||| ||||    
T  26025597 ttttgatctgaaatcaccccatcttcatctttttctctctatttcaatctaaataagtggtttt 26025534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 721
Target Start/End: Original strand, 41430927 - 41430978
Alignment:
Q  670 atctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagt 721  Q
    |||||||||||||| ||||| || |||||||| |||||||||||||||||||    
T  41430927 atctgaaatcacccctcttcatctttttctctatatttcaatctaaataagt 41430978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 42949616 - 42949671
Alignment:
Q  673 tgaaatcacccttcttcttcgtttt-ctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||    
T  42949616 tgaaatcacccctcttcatcttttttctctttatttcaatctaaataagtgatttt 42949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 27477057 - 27477111
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  27477057 tgaaatcacccctcttcatctttttctctatatttcaatctaaataagtaatttt 27477111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 8971846 - 8971751
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctct--ttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || ||||||||  |||||| |||||||||||||||||||    
T  8971846 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccctcttcatctttttctctctttattttaatctaaataagtgatttt 8971751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 723
Target Start/End: Complemental strand, 32680767 - 32680711
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||    
T  32680767 ttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtga 32680711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 32913138 - 32913198
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||  || |||||||| ||||||||| |||||||||||||||    
T  32913138 ttgacctgaaatcacccctcttgatccttttctctatatttcaatttaaataagtgatttt 32913198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 40660146 - 40660056
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||   |||||||| |||||  | |||| |||||||||| | ||||| || ||||||||  ||||||||||||||||||||||||    
T  40660146 tttcttcattgaggg---tggttttg-agtcaattcttgacctgaaatcacacatcttcatctttttctct--atttcaatctaaataagtgatttt 40660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 748
Target Start/End: Complemental strand, 41712944 - 41712870
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||||||| | ||| || |||||||| ||||| ||||||||||||||| |||||| ||| ||| |||||||||    
T  41712944 tgaaatcacccattttcatcattttctctctattttaatctaaataagtga-ttttcacatagatttaggtttttt 41712870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 728
Target Start/End: Original strand, 18694971 - 18695005
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgattttt 728  Q
    |||||||| ||||||||||||||||||||||||||    
T  18694971 ttttctctctatttcaatctaaataagtgattttt 18695005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 727
Target Start/End: Complemental strand, 31581886 - 31581844
Alignment:
Q  685 tcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  31581886 tcttcatctttttctctctatttcaatctaaataagtgatttt 31581844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 727
Target Start/End: Original strand, 34598902 - 34598944
Alignment:
Q  685 tcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  34598902 tcttcatctttttctctctatttcaatctaaataagtgatttt 34598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 3725044 - 3725137
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||| |||||||||||  ||||||| ||||  |||||| || ||||||  | ||||| || |||||||| ||||||||| |||||||||||||||    
T  3725044 tttctttattgaggggtg--gttttgg-gtcaatttttgacctaaaatcattcctcttcatctttttctctctatttcaatataaataagtgatttt 3725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 8805790 - 8805823
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||| |||||||||||||||    
T  8805790 ttttctctttatttcaatttaaataagtgatttt 8805823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 32197971 - 32197918
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    ||||||| | ||||| || |||||||||||||||||| ||||||| ||||||||    
T  32197971 aaatcactcatcttcatctttttctctttatttcaatataaataaatgattttt 32197918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 665 - 748
Target Start/End: Original strand, 43444295 - 43444377
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||    
T  43444295 ttttgatctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtga-ttttcacatatatctaggtttttt 43444377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 631 - 748
Target Start/End: Complemental strand, 38706928 - 38706815
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||||| ||||  | ||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||    
T  38706928 tttcttcattgaggggtg--gttttgg-gtcaattcttgatctaaaatcacccttcttcatctttttctctctatttcaatctaaataagtga-ttttca 38706833  T
Q  731 tatatattaaggtttttt 748  Q
     ||| ||| |||||||||    
T  38706832 catagatttaggtttttt 38706815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 12081388 - 12081481
Alignment:
Q  10 taatactgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatg 103  Q
    ||||||| |||||||||||||||||| ||| |||||||  ||||||||||||| ||||||||||||||| ||| || |||| |||||| |||||    
T  12081388 taatactacttcaggtataacaaagacatttttatttacataaatgttaaacaagttatattatgtgttattttcttattagtatatgatgatg 12081481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 672 - 728
Target Start/End: Original strand, 9283820 - 9283876
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9283820 ctgaaatcacccctcttcatcgttttctctttatttcaatctaaataagtgattttt 9283876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 631 - 749
Target Start/End: Original strand, 21090023 - 21090138
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    |||||||||||||||| |||||||||| ||||   |||||||||||||||| | ||||| || |||||||| ||||||||| ||||||||||| ||||||    
T  21090023 tttcttcattgagggg-gtggttttgg-gtcaatctttgatctgaaatcactcatcttcatctttttctctctatttcaatataaataagtga-ttttca 21090119  T
Q  731 tatatattaaggttttttc 749  Q
     ||| ||| ||||||||||    
T  21090120 catagatttaggttttttc 21090138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 10359765 - 10359671
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||| |||||||||| ||||  |||||| ||||||||||||  |||| || |||||||| |||||| ||||||||||||||||||    
T  10359765 tttcttcattgagggg-gtggttttgg-gtcaatttttgacctgaaatcacccaacttcatctttttctctctatttcgatctaaataagtgatttt 10359671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 53616836 - 53616776
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  53616836 ttgacctgaaatcaccactcttcatcgttttctctttatttcaatctaaataagtgatttt 53616776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 635 - 748
Target Start/End: Complemental strand, 2115802 - 2115693
Alignment:
Q  635 ttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatata 734  Q
    ||||||||||||||  ||||||| ||||  | |||| ||||||||||  |||||| || |||||||||||||||||||||||||||||| |||||| |||    
T  2115802 ttcattgaggggtg--gttttgg-gtcaattattgacctgaaatcacttttcttcatctttttctctttatttcaatctaaataagtga-ttttcacata 2115707  T
Q  735 tattaaggtttttt 748  Q
     ||| |||||||||    
T  2115706 gatttaggtttttt 2115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 47416794 - 47416848
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  47416794 tgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 47416848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 9529096 - 9529003
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||  ||||||| ||||  | |||| |||||||||||| ||||  || ||||||||||||||||||||||||||||||||||    
T  9529096 tttcttcactgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctctttatctttttctctttatttcaatctaaataagtgatttt 9529003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 34024654 - 34024561
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||||| |||  | |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  34024654 tttcttcattgaggggtg--gttttgga-tcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagttatttt 34024561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 748
Target Start/End: Complemental strand, 35965192 - 35965079
Alignment:
Q  632 ttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcat 731  Q
    |||||||||||||||||  ||||||| ||||  |||| | |||||||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||     
T  35965192 ttcttcattgaggggtg--gttttgg-gtcaattttttacctgaaatcacctctcttcatctttttctctctatttcaatctgaataagtgatttttcac 35965096  T
Q  732 atatattaaggtttttt 748  Q
    ||| ||  |||||||||    
T  35965095 atagatctaggtttttt 35965079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 665 - 749
Target Start/End: Complemental strand, 18139100 - 18139016
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    |||||| ||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  18139100 ttttgacctggaatcacacctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttc 18139016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 665 - 749
Target Start/End: Complemental strand, 49126313 - 49126229
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    |||||| ||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  49126313 ttttgacctggaatcacacctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttc 49126229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 50766694 - 50766634
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||||    
T  50766694 ttgatctgaaatcatccctcttcatctttttctctttatttcaatctaaataaatgatttt 50766634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 631 - 752
Target Start/End: Complemental strand, 10389971 - 10389854
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||  |||||    
T  10389971 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtga-ctttca 10389876  T
Q  731 tatatattaaggttttttcctt 752  Q
     ||| ||  |||||||||||||    
T  10389875 catagatctaggttttttcctt 10389854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 5333646 - 5333581
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    |||||| |||||||||| | ||||| || |||||||| ||||||||| ||||||||||||||||||    
T  5333646 ttttgacctgaaatcacacatcttcatctttttctctctatttcaatataaataagtgatttttca 5333581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 12265357 - 12265422
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    |||||| |||||||||||| ||||| || |||| ||  ||||||||||||||||||||||||||||    
T  12265357 ttttgacctgaaatcacccctcttcatctttttatccctatttcaatctaaataagtgatttttca 12265422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 666 - 727
Target Start/End: Original strand, 51317889 - 51317950
Alignment:
Q  666 tttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  51317889 tttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtgatttt 51317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 56194467 - 56194559
Alignment:
Q  631 tttcttcattgaggggtg-tggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||||||||||||||| ||||||||| ||||  | |||| |||||||||  | ||||| || |||||||| |||||||||||||||||||||    
T  56194467 tttcttcattgaggggtggtggttttgg-gtcaattcttgacctgaaatcaaacctcttcatctttttctctctatttcaatctaaataagtga 56194559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 37188777 - 37188717
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  37188777 ttgacctgaaatcactcatcttcatctttttctctatatttcaatctaaataagtgatttt 37188717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 20569161 - 20569216
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||| |||||||    
T  20569161 ctgaaatcacccctcttcatttttttctctttatttcaatctaaataaatgatttt 20569216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 727
Target Start/End: Original strand, 29965564 - 29965598
Alignment:
Q  693 gttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||||||||||||||||||||    
T  29965564 gttttctctttatttcaatctaaataagtgatttt 29965598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 727
Target Start/End: Complemental strand, 43154199 - 43154146
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  43154199 tgaaatcacccctcttcatc-ttttctctctatttcaatctaaataagtgatttt 43154146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 728
Target Start/End: Original strand, 6972713 - 6972774
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    ||||||||||||||||  ||||| || |||| ||| ||||||||||||||||||||| ||||    
T  6972713 ttgatctgaaatcacctctcttcatctttttatctgtatttcaatctaaataagtgactttt 6972774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 726
Target Start/End: Original strand, 4643758 - 4643821
Alignment:
Q  665 ttttgatctgaaatcaccct--tcttcttcgttttctctttatttcaatctaaataagtgattt 726  Q
    |||||| ||||||||||||   ||||| || |||||||| ||||||||||||||||||||||||    
T  4643758 ttttgacctgaaatcacccccctcttcatctttttctctctatttcaatctaaataagtgattt 4643821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 728
Target Start/End: Complemental strand, 5333733 - 5333655
Alignment:
Q  648 gtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||||||||| ||||  ||||||  |||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||    
T  5333733 gtggttttgg-gtcaatttttgacatgaaatcaccct-cttcatctttttctctctatttcaatataaataagtgattttt 5333655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 727
Target Start/End: Complemental strand, 8009527 - 8009484
Alignment:
Q  684 ttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||| || |||||||| |||||||||||||||||||||||||    
T  8009527 ttcttcatctttttctctctatttcaatctaaataagtgatttt 8009484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 1531777 - 1531871
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttt-tctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  || |||| ||||  | |||| |||||||||||| ||||  || ||| ||||| |||||||||||||||||||||||||    
T  1531777 tttcttcattgaggggtg--gtattgg-gtcaattcttgacctgaaatcacccctctttatcttttctctctctatttcaatctaaataagtgatttt 1531871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 727
Target Start/End: Original strand, 49680459 - 49680501
Alignment:
Q  685 tcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| || ||||||||||||||||||| ||||||||||||||    
T  49680459 tcttcatctttttctctttatttcaatccaaataagtgatttt 49680501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 747
Target Start/End: Original strand, 4937757 - 4937797
Alignment:
Q  706 ttcaatctaaataagtgatttttcatatatattaaggttttt 747  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  4937757 ttcaatctaaataagtga-ttttcatatatattaagtttttt 4937797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 723
Target Start/End: Complemental strand, 9645767 - 9645678
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||||||||||||||   ||||||| ||||  | |||| |||| ||||||| ||||| || |||| ||| |||||||||||||||||||||    
T  9645767 tttcttcattgaggggtc--gttttgg-gtcaattcttgacctgatatcacccctcttcatctttttgtctctatttcaatctaaataagtga 9645678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 14183734 - 14183767
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||||||||||||||||||    
T  14183734 ttttctctctatttcaatctaaataagtgatttt 14183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 25273811 - 25273844
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||||||||||||||||||    
T  25273811 ttttctctctatttcaatctaaataagtgatttt 25273844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Complemental strand, 49072915 - 49072882
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||||| ||||||||||||    
T  49072915 ttttctctttatttcaatctatataagtgatttt 49072882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 729
Target Start/End: Complemental strand, 52098107 - 52098042
Alignment:
Q  665 ttttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttttc 729  Q
    ||||||| |||||||||| | | ||| || |||||||  |||||||||||||||||||||||||||    
T  52098107 ttttgatttgaaatcaccttatgttcatccttttctccctatttcaatctaaataagtgatttttc 52098042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 35209056 - 35208982
Alignment:
Q  38 ttgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgc 112  Q
    |||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||    
T  35209056 ttgttatttacgtaaatgttaaatatgttatattacgtgttctttactgattagtatatgttgatgcatgcatgc 35208982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 31250533 - 31250639
Alignment:
Q  18 cttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatt 117  Q
    |||||||||| ||||||| |||||||||||||||| | |||||||||||| ||||||| ||||||| | | ||||||||| |||||||| |||| | |||    
T  31250533 cttcaggtatgacaaagaaattgttatttatgtaattattaaacatgttacattatgtattgtttagt-agtaatatatgatgatgcatgcatgaaaatt 31250631  T
Q  118 tcaacact 125  Q
    ||| ||||    
T  31250632 tcagcact 31250639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 635 - 727
Target Start/End: Original strand, 46821877 - 46821966
Alignment:
Q  635 ttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  46821877 ttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 46821966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 27661565 - 27661649
Alignment:
Q  18 cttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgat 102  Q
    |||||||||||||||| | |||||||||||  ||| |  ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  27661565 cttcaggtataacaaacaaattgttatttacataacttgtaaacatgttatattatttgttgtttattgattagtatatgttgat 27661649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 20116473 - 20116535
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||| |||||||||||||||||| || |||||| | |||||||||||||||||||||||||    
T  20116473 ttttgacctgaaatcacccttcttcatctttttctatctatttcaatctaaataagtgatttt 20116535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 631 - 748
Target Start/End: Original strand, 26583573 - 26583686
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||| | ||||  | |||| |||||||||||| ||||| || |||| ||| ||||||||||||||||||||| ||||||    
T  26583573 tttcttcattgaggggtg--gtttttg-gtcaattcttgacctgaaatcacccctcttcatctttttatctctatttcaatctaaataagtga-ttttca 26583668  T
Q  731 tatatattaaggtttttt 748  Q
    |||||||  |||||||||    
T  26583669 tatatatctaggtttttt 26583686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 2843445 - 2843352
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2843445 tttcttcattgaagggtg--gttttgg-gtcaattcttgacctgaaaacacccctcttcatctttttctctttatttcaatctaaataagtgatttt 2843352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 746
Target Start/End: Original strand, 6001911 - 6001992
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttt 746  Q
    |||||| |||||||||||| ||||| || |||||||  ||||| |||||||||||||||||||||| ||| ||| |||||||    
T  6001911 ttttgacctgaaatcacccatcttcatctttttctccctattttaatctaaataagtgatttttcacatagatttaggtttt 6001992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 728
Target Start/End: Complemental strand, 23425556 - 23425495
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  23425556 ttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgattttt 23425495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 730
Target Start/End: Complemental strand, 31236013 - 31235914
Alignment:
Q  629 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||||||||||||||||  ||| |||||| ||||  ||||||  ||||||| ||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  31236013 attttcttcattgaggga-gtgattttgg-gtcaatttttgacatgaaatctcccctcttcatctttttctctctatttcaatctaaataagtgattttt 31235916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 32684544 - 32684637
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||||||    
T  32684544 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacatgtcttcatcgttttctctctatttcaatctaaataagtgatttt 32684637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 21266290 - 21266344
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  21266290 tgaaatcacctctcttcatctttttctctttatttcaatctaaataagtgatttt 21266344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 26492224 - 26492317
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||| |||| ||||| || |||||||| ||||||||| |||||||||||||||    
T  26492224 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaataacccctcttcatctttttctctctatttcaatttaaataagtgatttt 26492317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 727
Target Start/End: Complemental strand, 35667408 - 35667356
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||| |  |||||||| |||||||||||||||||||||||||    
T  35667408 aaatcacccttcttcatatttttctctctatttcaatctaaataagtgatttt 35667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 48207794 - 48207854
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||  |||||||||||||||||||||||||    
T  48207794 ttgacctgaaatcacccctcttcatctttttctcaatatttcaatctaaataagtgatttt 48207854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 724
Target Start/End: Original strand, 42311139 - 42311229
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgat 724  Q
    |||||||| |||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || |||||||| ||||||||||||||||||||||    
T  42311139 tttcttcactgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccctcttcatcattttctctctatttcaatctaaataagtgat 42311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 35496393 - 35496300
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||||  ||||| || |||||||| ||||||||||||| |||||||||||    
T  35496393 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcaccaatcttcatctttttctctctatttcaatctaattaagtgatttt 35496300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 46338912 - 46339005
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||   ||||||| ||||  | |||| ||||||| | || ||||| || |||||||||||||||||| |||||||||||||||    
T  46338912 tttcttcattgaggggta--gttttgg-gtcaattcttgacctgaaattatccctcttcatctttttctctttatttcaatgtaaataagtgatttt 46339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 723
Target Start/End: Complemental strand, 1485433 - 1485385
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  1485433 aaatcacccgtcttcatctttttctctctatttcaatctaaataagtga 1485385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 723
Target Start/End: Complemental strand, 22928055 - 22927999
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||||| | ||| || |||||||| |||||||||||||||||||||    
T  22928055 ttgacctgaaatcaccccttttcatctttttctctctatttcaatctaaataagtga 22927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 719
Target Start/End: Original strand, 42408254 - 42408306
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataa 719  Q
    |||| ||||||||| || ||||| || ||||||||||||||||||||||||||    
T  42408254 ttgacctgaaatcatccatcttcatctttttctctttatttcaatctaaataa 42408306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 45199216 - 45199156
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||| ||||| ||| |||||||||||||||    
T  45199216 ttgacctgaaatcacccatcttcatctttttctctatattttaatttaaataagtgatttt 45199156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 5546278 - 5546311
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||||||||||||||||||    
T  5546278 ttttctctctatttcaatctaaataagtgatttt 5546311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 7997681 - 7997743
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  7997681 ttttgatctgaaatcacccttcttcatctttttctctttatttcaatataaataagtgatttt 7997743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 20266164 - 20266258
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||| |||||| |||||||||| ||||  | ||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  20266164 tttcttcatcgagggg-gtggttttgg-gtcaattcttgatctaaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 20266258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 3190874 - 3190782
Alignment:
Q  14 actgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg 103  Q
    |||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||| | |    |||||||||||||| ||||||||||||    
T  3190874 actgcttcaggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg 3190782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 3199692 - 3199600
Alignment:
Q  14 actgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg 103  Q
    |||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||| | |    |||||||||||||| ||||||||||||    
T  3199692 actgcttcaggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg 3199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 3208530 - 3208438
Alignment:
Q  14 actgcttcaggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg 103  Q
    |||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||| | |    |||||||||||||| ||||||||||||    
T  3208530 actgcttcaggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg 3208438  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 631 - 748
Target Start/End: Complemental strand, 19716114 - 19716002
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||| ||||  ||||||| ||||  | |||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||    
T  19716114 tttcttcattgagaggtg--gttttgg-gtcaattcttgatctgaaatcaccct-cttcatctttttctctttatttcaatctaaataagtga-ttttca 19716020  T
Q  731 tatatattaaggtttttt 748  Q
     ||| ||| |||||||||    
T  19716019 catagatttaggtttttt 19716002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 643 - 723
Target Start/End: Complemental strand, 45806017 - 45805938
Alignment:
Q  643 ggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||    
T  45806017 ggggggtggttttgg-gtcaatttttgatctgaaatcacctttcttcctctttttctctctatttcaatctaaataagtga 45805938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 30818563 - 30818470
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||   ||||||| ||||  | |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  30818563 tttcttcattgaggggta--gttttgg-gtcaattattgacctgaaatcacccatcttcatctttttctctctatttcaatctaaataagtgatttt 30818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 50148235 - 50148328
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | | |||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||    
T  50148235 tttcttcattgaggggtg--gttttgg-gtcaattctagatctgaaatcatccatcttcatccttttctctttattttaatctaaataagtgatttt 50148328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 5701153 - 5701213
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || |||||||||||||||||| |||||||||||||||    
T  5701153 ttgacctgaaatcacccctcttcatctttttctctttatttcaatttaaataagtgatttt 5701213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 25728144 - 25728084
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  25728144 ttgacctgaaatcactcctcttcatctttttctctttatttcaatctaaataagtgatttt 25728084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 35584801 - 35584746
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  35584801 ctgaaatcactcatcttcatctttttctctttatttcaatctaaataagtgatttt 35584746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 18569528 - 18569435
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  ||||||   |||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  18569528 tttcttcattgaggggtg--gttttgg-gtcaatttttgacaagaaatcacctgtcttcatctttttctctctatttcaatctaaataagtgatttt 18569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 30878938 - 30879031
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  |||||| |||| |||| |  ||||| || |||||||||||||| |||||||||||||||||||    
T  30878938 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctgagatcatctctcttcatctttttctctttattttaatctaaataagtgatttt 30879031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 40646551 - 40646644
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||| | ||||| || |||||| |||||||||||||||||||||||||||    
T  40646551 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcactcatcttcatctttttctatttatttcaatctaaataagtgatttt 40646644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 50272358 - 50272265
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||||||||| | ||| || |||||||||||||||||||||||||||| |||||    
T  50272358 tttcttcattgaagggtg--gttttgg-gtcaattcttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtaatttt 50272265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 14545416 - 14545476
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  14545416 ttgacctgaaatcactcatcttcatctttttctctatatttcaatctaaataagtgatttt 14545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 28035035 - 28035095
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  28035035 ttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtgatttt 28035095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 38520752 - 38520658
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||| ||||| ||||||||||| |||  |||| | |||||||||| | ||||| || |||||||| |||||| ||||||||||||||||||    
T  38520752 tttcttcattaagggg-gtggttttgga-tcaattttttacctgaaatcactcatcttcatctttttctctctatttcgatctaaataagtgatttt 38520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 45426281 - 45426187
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||| |||||||||| ||||  | ||||| ||||||||||  | ||| || |||||||| ||||| |||||||||||||||||||    
T  45426281 tttcttcattgagggg-gtggttttgg-gtcaattcttgatttgaaatcacctattttcatctttttctctctatttaaatctaaataagtgatttt 45426187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 723
Target Start/End: Complemental strand, 51868830 - 51868774
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  51868830 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga 51868774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 677 - 728
Target Start/End: Original strand, 9919295 - 9919346
Alignment:
Q  677 atcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    ||||||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  9919295 atcacccctcttcatctttttctctctatttcaatctaaataagtgattttt 9919346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 727
Target Start/End: Original strand, 27872617 - 27872695
Alignment:
Q  648 gtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||| ||||  ||||||  ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||    
T  27872617 gtggttttgg-gtcaatttttgacatgaaatcacccatcttcatctttttcgctctatttcaatctaaataagtgatttt 27872695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 734
Target Start/End: Original strand, 39987292 - 39987353
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatata 734  Q
    ||||||||||  ||||| || |||||||| |  |||||||||||||||||||||||||||||    
T  39987292 tgaaatcacctctcttcatctttttctctctgattcaatctaaataagtgatttttcatata 39987353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 5324742 - 5324682
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| ||| |||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  5324742 ttgacctggaatcacctctcttcatctttttctctctatttcaatctaaataagtgatttt 5324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 723
Target Start/End: Complemental strand, 25406469 - 25406413
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||    
T  25406469 ttgacctgaaatcacacctcttcatctttttctctctatttcaatctaaataagtga 25406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 723
Target Start/End: Original strand, 51871768 - 51871816
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  51871768 aaatcacccctcttcatctttttctctctatttcaatctaaataagtga 51871816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 728
Target Start/End: Original strand, 7342585 - 7342679
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    ||||||||||| ||||||  ||||||| ||||  |||||| |||||||||||| ||||| |  |||| | | ||||||||||||||||||||| ||||    
T  7342585 tttcttcattggggggtg--gttttgg-gtcaatttttgacctgaaatcacccctcttcatatttttttatctatttcaatctaaataagtgactttt 7342679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 9172351 - 9172440
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||||| ||||||  ||||||| ||||  | |||| |||||||||||| ||||| |  |||| ||| |||||||||||||||||||||    
T  9172351 tttcttcattggggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatatttttttctctatttcaatctaaataagtga 9172440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 9180333 - 9180422
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||||| ||||||  ||||||| ||||  | |||| |||||||||||| ||||| |  |||| ||| |||||||||||||||||||||    
T  9180333 tttcttcattggggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatatttttttctctatttcaatctaaataagtga 9180422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 34519056 - 34519089
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||||||||||||||||||    
T  34519056 ttttctctctatttcaatctaaataagtgatttt 34519089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 40881231 - 40881138
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||| ||  ||||||| ||||  | |||| || ||||||| | ||||| || |||||||| ||||||||||||||| |||||||||    
T  40881231 tttcttcattgagggatg--gttttgg-gtcaattcttgacctaaaatcactcatcttcatctttttctctctatttcaatctaaatgagtgatttt 40881138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 44637345 - 44637378
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||||||||||||||||||||    
T  44637345 ttttatctttatttcaatctaaataagtgatttt 44637378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 9619576 - 9619483
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  9619576 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 9619483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 43890343 - 43890250
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||||| |||  |||||| |||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  43890343 tttcttcattgaggggtg--gttttgga-tcattttttgacctgaaatcacccctcttcatctttttctctttaattcaatctaaataagtgatttt 43890250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 749
Target Start/End: Original strand, 11725548 - 11725662
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||    
T  11725548 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcgtctttttctctttatttcaatctaaataagtg-tttttca 11725643  T
Q  731 tatatattaaggttttttc 749  Q
     ||| ||  ||||||||||    
T  11725644 catagatctaggttttttc 11725662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 629 - 730
Target Start/End: Original strand, 28239696 - 28239795
Alignment:
Q  629 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||||||||||||||||| ||| |||||| ||||  |||||| |||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||    
T  28239696 attttcttcattgagggg-gtgattttgg-gtcaatttttgacctgaaatcacctctcttcatctttttctctctatttcaatctaaataagtgtttttt 28239793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 14907109 - 14907049
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  14907109 ttgacctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 14907049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 631 - 749
Target Start/End: Original strand, 33342303 - 33342418
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||||| ||||  |||| | |||||||||||| ||||| || |||| ||| || |||||||||||||||||||||||||    
T  33342303 tttcttcattgaggggtg--gttttgg-gtcaatttttaacctgaaatcacccctcttcatccttttttctctaattcaatctaaataagtgatttttca 33342399  T
Q  731 tatatattaaggttttttc 749  Q
     ||| ||  ||||||||||    
T  33342400 catagatctaggttttttc 33342418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 631 - 748
Target Start/End: Complemental strand, 9498819 - 9498707
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||||| |||| ||| | | |||||||||||| ||||| || |||| ||||||||||||||||||||||||| ||||||    
T  9498819 tttcttcattgaggggtg--gttttgg-gtca-attcttacctgaaatcacccctcttcatctttttatctttatttcaatctaaataagtga-ttttca 9498725  T
Q  731 tatatattaaggtttttt 748  Q
     ||| ||| |||||||||    
T  9498724 catagatttaggtttttt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 2655735 - 2655828
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||| ||||  ||||||| ||||  | |||| ||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2655735 tttcttcattgagcggtg--gttttgg-gtcaattcttgacctgcaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 2655828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 42448213 - 42448154
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 726  Q
    |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  42448213 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgattt 42448154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 747
Target Start/End: Original strand, 16794198 - 16794272
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttt 747  Q
    ||||||||||| ||||| || |||||||| || ||||||||||||||||||||||||| ||| ||  ||||||||    
T  16794198 tgaaatcacccatcttcatctttttctctctaattcaatctaaataagtgatttttcacataaatctaggttttt 16794272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 4808830 - 4808923
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||| |||| ||||| || |||| ||||||||||||| |||||||||||||||    
T  4808830 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaattacccctcttcatctttttttctttatttcaatgtaaataagtgatttt 4808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 726
Target Start/End: Original strand, 44577902 - 44577994
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 726  Q
    ||||||||||||||||||  ||||||| ||||  |||||| || ||||||| | ||||| || |||||||| ||||||||||||| ||||||||||    
T  44577902 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctaaaatcactcctcttcatctttttctctctatttcaatctaactaagtgattt 44577994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 748
Target Start/End: Complemental strand, 37566065 - 37565984
Alignment:
Q  667 ttgatctgaaatcacccttcttc-ttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||||||||||||||||||| ||  |||| ||| ||||||||||||||||| ||| |||||| ||| ||| |||||||||    
T  37566065 ttgatctgaaatcacccttcttcattttttttatctctatttcaatctaaataattga-ttttcacatagatttaggtttttt 37565984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 44100150 - 44100057
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||| |||| |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  44100150 tttcttcattgaggggtg--gttttgg-gtc-gattcttgacctaaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 44100057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 723
Target Start/End: Original strand, 9072583 - 9072672
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||||| ||||||  ||||||| ||||  ||||||  ||||||||||| ||||| || |||||||| ||||||||| |||||||||||    
T  9072583 tttcttcattggggggtg--gttttgg-gtcaatttttgacttgaaatcacccctcttcatctttttctctctatttcaatttaaataagtga 9072672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 32724708 - 32724614
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| |||||||||| |||||||||| |||| ||| |||| ||||||||||   ||||| || |||||||| |||||||||||||||||||||||||    
T  32724708 tttctccattgagggg-gtggttttgg-gtcaaattattgacctgaaatcacttctcttcatc-ttttctctctatttcaatctaaataagtgatttt 32724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 17949146 - 17949206
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| |||||  | |||||||| |||||||||||||||||| ||||||    
T  17949146 ttgacctgaaatcacccctcttcacctttttctctctatttcaatctaaataagcgatttt 17949206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 35580323 - 35580417
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||| || |||||||||| ||||  ||||||  | ||||||| | ||||| || |||||||| ||||||||| |||||||||||||||    
T  35580323 tttcttcattgagagg-gtggttttgg-gtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtgatttt 35580417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 11196758 - 11196849
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||| ||||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || ||||||||  ||||||||||||||||||||||||    
T  11196758 tttcttcgttgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccatcttcatctttttctct--atttcaatctaaataagtgatttt 11196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 749
Target Start/End: Original strand, 19876111 - 19876192
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    |||| ||||||| || | ||||| || |||||||  ||||||||||||||||||||| |||||| ||| || |||||||||||    
T  19876111 ttgacctgaaattactcatcttcatctttttctcaatatttcaatctaaataagtga-ttttcacatagatcaaggttttttc 19876192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 8496824 - 8496917
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||| |||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  8496824 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 8496917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 23947535 - 23947442
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  23947535 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccatcttcatcgttttctctctatttcaatctaaataagtgatttt 23947442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 7876263 - 7876170
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||||| |||  | |||| || ||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  7876263 tttcttcattgaggggtg--gttttgga-tcaattattgacctaaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 7876170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 7881321 - 7881228
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||||| |||  | ||||  |||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  7881321 tttcttcattgaggggtg--gttttgga-tcaattattgacttgaaatcacctttcttcatctttttctctttatttcaatctaaataagtgatttt 7881228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 12652799 - 12652892
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  12652799 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgatttt 12652892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 25064094 - 25064187
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  25064094 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacctctcttcatctttttctctttatttcaatctaaataagtgatttt 25064187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 17334667 - 17334727
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||  ||||| || |||||| |||||||||||||||||||||||||||    
T  17334667 ttgatctgaaatcaccaatcttcatctttttctgtttatttcaatctaaataagtgatttt 17334727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 8196624 - 8196532
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||   |||||||||| |||| | |||| || ||||||||| | ||| || |||||||| |||||||||||||||||||||||||    
T  8196624 tttcttcattgaggg---tggttttgga-tcagttcttgacctaaaatcacccgtattcatctttttctctctatttcaatctaaataagtgatttt 8196532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 631 - 747
Target Start/End: Complemental strand, 33543838 - 33543724
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttctt-cttcgttttctctttatttcaatctaaataagtgatttttc 729  Q
    ||||||| ||||||||||  |||||| |||||| |||||| |||||||||| | |||| | || |||||||| ||||||||||||||||||| |||||||    
T  33543838 tttcttcgttgaggggtg--gttttg-agtcagtttttgacctgaaatcactcatctttcatctttttctctatatttcaatctaaataagtaatttttc 33543742  T
Q  730 atatatattaaggttttt 747  Q
    | ||| ||| | ||||||    
T  33543741 acatagatttaagttttt 33543724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 631 - 748
Target Start/End: Complemental strand, 33740796 - 33740683
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||||||||||||  ||||| | ||||  | |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||||    
T  33740796 tttcttcattgaggggtg--gtttttg-gtcaattcttgacctaaaatcacccctcttcatctttttctctctatttcaatctaaataagtga-ttttca 33740701  T
Q  731 tatatattaaggtttttt 748  Q
     ||| ||| |||||||||    
T  33740700 catagatttaggtttttt 33740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 33109693 - 33109786
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||| |||||  ||||||| ||||  |||||| || |||||  || ||||| || ||||||||||||||||||||||||||||||||||    
T  33109693 tttcttcattgacgggtg--gttttgg-gtcaatttttgacctaaaatcgtccatcttcatctttttctctttatttcaatctaaataagtgatttt 33109786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 727
Target Start/End: Complemental strand, 17237463 - 17237409
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  17237463 tgaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 17237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 4984795 - 4984703
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| ||||||||||||  ||||||| ||||  | |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  4984795 tttctccattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcatcttcatc-ttttctctctatttcaatctaaataagtgatttt 4984703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 673 - 749
Target Start/End: Original strand, 4468457 - 4468532
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    |||| |||||| ||||| || | |||||| ||||||||||||||||||||| |||||||||| ||  ||||||||||    
T  4468457 tgaagtcacccctcttcatcttgttctctctatttcaatctaaataagtga-ttttcatatagatctaggttttttc 4468532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 8028303 - 8028243
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| ||||||||  |||| || |||||||| | |||||||||||||||||||||||    
T  8028303 ttgatctggaatcaccccacttcatctttttctctctgtttcaatctaaataagtgatttt 8028243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 723
Target Start/End: Original strand, 16419058 - 16419106
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  16419058 aaatcacccatcttcatctttttctctctatttcaatctaaataagtga 16419106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 728
Target Start/End: Original strand, 10228571 - 10228632
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||| |||||||||||| ||||| || || ||||| || |||||||||||||||||| ||||    
T  10228571 ttgacctgaaatcacccctcttcatctttctctctctacttcaatctaaataagtgactttt 10228632  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 667 - 748
Target Start/End: Original strand, 36906011 - 36906091
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    |||| |||||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||| ||| |||||||||    
T  36906011 ttgacctgaaatcacccttcttcatctttttctctttatttcaatataaataagtga-ttttcacatagatttaggtttttt 36906091  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 22507987 - 22507888
Alignment:
Q  49 gtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaacacttttgagagagtcgagcctaggga 148  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |  | | ||||||| ||||| |||||| || ||| |||||||||    
T  22507987 gtaaatgttaaacatgttatattatgtgttgtttacatattaatatatgtagatgtaggcgttcatattttaacac-tttgagggattcgcgcctaggga 22507889  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 32607324 - 32607417
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||| |||||||||| ||||  | |||| ||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  32607324 tttcttcattgagggg-gtggttttgg-gtcaattcttgacctgaaat-acccctcttcatcattttctctttatttcaatctaaataagtgatttt 32607417  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 4178421 - 4178514
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  4178421 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcacccatcttcatctttttctctctatttcaatctaaataagtgatttt 4178514  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 44907617 - 44907524
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||| ||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||    
T  44907617 tttcttctttgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaacaagtgatttt 44907524  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 46934499 - 46934592
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||| | ||||  |||||| |||||||||||| ||||| || || ||||| |||||||||||||||||||||||||    
T  46934499 tttcttcattgaggggtg--gtttttg-gtcaatttttgacctgaaatcacccctcttcatctttctctctctatttcaatctaaataagtgatttt 46934592  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 14464397 - 14464457
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||    
T  14464397 ttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtgatttt 14464457  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 667 - 726
Target Start/End: Original strand, 25162326 - 25162385
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 726  Q
    ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  25162326 ttgatttgaaatcacccatcttcatctttttctctctatttcaatctaaataagtgattt 25162385  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 12115950 - 12116043
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||| |||||  | |||| ||||||||| |  ||||| || ||| ||||||||||||||||||||||||||||||    
T  12115950 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcatctctcttcatcttttcctctttatttcaatctaaataagtgatttt 12116043  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 673 - 730
Target Start/End: Original strand, 22802917 - 22802974
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 730  Q
    ||||||||| | ||||| || |||||||| ||||||||||||||||||||||||||||    
T  22802917 tgaaatcactcctcttcatctttttctctctatttcaatctaaataagtgatttttca 22802974  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 25631745 - 25631652
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  ||||||| ||||  |||||| || |||||| || ||| | || |||||||| |||||||||||||||||||||||||    
T  25631745 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgatttt 25631652  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 632 - 727
Target Start/End: Complemental strand, 35499419 - 35499326
Alignment:
Q  632 ttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||||||||||||  ||||| | ||||  |||| | ||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  35499419 ttcttcattgaggggtg--gtttttg-gtcaattttttacctgaaatcaccccctcttcatctttttctctttatttcaatctaaataagtgatttt 35499326  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 748
Target Start/End: Complemental strand, 50611594 - 50611522
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||||||| |||||||||| ||  |||||||||    
T  50611594 aaatcacccctcttcatctttttctctatatttcaatctaaataagtga-ttttcatatagatctaggtttttt 50611522  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 723
Target Start/End: Complemental strand, 3850640 - 3850584
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  3850640 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga 3850584  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 749
Target Start/End: Original strand, 46178471 - 46178548
Alignment:
Q  672 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 749  Q
    ||||||||| || ||||| || |||||||| || ||||||||||||||||| ||||||| ||| ||  ||||||||||    
T  46178471 ctgaaatcatccctcttcatctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttttc 46178548  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 723
Target Start/End: Complemental strand, 49552441 - 49552352
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||||||||| ||||| || |||| ||| |||||||||||||||||||||    
T  49552441 tttcttcattgatgggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatcattttttctctatttcaatctaaataagtga 49552352  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 727
Target Start/End: Original strand, 4172464 - 4172516
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  4172464 aaatcatccatcttcatctttttctctctatttcaatctaaataagtgatttt 4172516  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Original strand, 29503352 - 29503412
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||||| ||||| |  |||||||| ||||||||||||||||| |||||||    
T  29503352 ttgacctgaaatcacccatcttcatatttttctctatatttcaatctaaataattgatttt 29503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 38440762 - 38440702
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    |||| |||||||||| | ||||  || |||||||| |||||||||||||||||||||||||    
T  38440762 ttgacctgaaatcactcctctttatctttttctctctatttcaatctaaataagtgatttt 38440702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 727
Target Start/End: Complemental strand, 38855214 - 38855162
Alignment:
Q  675 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||| ||||| || |||||||| ||| |||||||||||||||||||||    
T  38855214 aaatcacccctcttcatctttttctctctatatcaatctaaataagtgatttt 38855162  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 727
Target Start/End: Original strand, 2342390 - 2342441
Alignment:
Q  676 aatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  2342390 aatcaaccctcttcatctttttctctctatttcaatctaaataagtgatttt 2342441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 723
Target Start/End: Original strand, 21487999 - 21488057
Alignment:
Q  665 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 723  Q
    |||||| |||||||||||  ||||| || ||||||||  ||||||||||||||||||||    
T  21487999 ttttgacctgaaatcaccaatcttcatctttttctctccatttcaatctaaataagtga 21488057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 17237720 - 17237772
Alignment:
Q  695 tttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||| ||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  17237720 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 17237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 752
Target Start/End: Complemental strand, 39917581 - 39917497
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttcctt 752  Q
    |||| ||||||||| || ||||| |  |||||||| || |||||||||||||||||| |||||| ||| ||  |||||||||||||    
T  39917581 ttgacctgaaatcatccatcttcatatttttctctctaattcaatctaaataagtga-ttttcacatagatctaggttttttcctt 39917497  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 8618 - 8672
Alignment:
Q  673 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||| | ||| || |||| ||| |||||||||||||||||||||||||    
T  8618 tgaaatcaccccttttcatctttttatctctatttcaatctaaataagtgatttt 8672  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 362012 - 361921
Alignment:
Q  631 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 727  Q
    ||||||||||||||||||  |||||| |||||  | |||| |||||||||||| ||| | || ||||||||  |||||||||||||||||| |||||    
T  362012 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcacccctctccatctttttctct--atttcaatctaaataagtaatttt 361921  T

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Target: scaffold0495 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 728
Target Start/End: Original strand, 5290 - 5351
Alignment:
Q  667 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 728  Q
    |||| |||||||||||| ||||| || || ||||| || |||||||||||||||||| ||||    
T  5290 ttgacctgaaatcacccctcttcatctttctctctctacttcaatctaaataagtgactttt 5351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 16479 - 16427
Alignment:
Q  695 tttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 748  Q
    ||||||| ||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  16479 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 16427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Complemental strand, 201529 - 201496
Alignment:
Q  694 ttttctctttatttcaatctaaataagtgatttt 727  Q
    |||||||| |||||||||||||||||||||||||    
T  201529 ttttctctatatttcaatctaaataagtgatttt 201496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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