View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_high_23 (Length: 254)
Name: NF19141_high_23
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_high_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 34120237 - 34120482
Alignment:
| Q |
6 |
gtcgaagaatattcatgcgaaatcagagaagaaccttcatcacaacccatgtttatctaaacgtccaaatgcacattactttcacgatgagagtgataga |
105 |
Q |
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| T |
34120237 |
gtcgaacaaaattcatgcgaaatcagagaagaaccttcatcacaacccatgtttatctaaacgtccaaatgcacattactttcacgatgagagtgataga |
34120336 |
T |
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| Q |
106 |
tacggacttcctaaaaaattgattgaattgtttgcagttgtattacaagtgttttctctnnnnnnntatatattgatataaactaatccaattaagtgta |
205 |
Q |
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| T |
34120337 |
tacggacttcctaaaaaattgattgaattgtttgcagttgtattacaagtgttttctctaaaaa---aaatattgatataaactaatccaattaagttta |
34120433 |
T |
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| Q |
206 |
gtttggattgatctgttcattcgatctttgcctacatgtaagtttatat |
254 |
Q |
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| T |
34120434 |
gtttggattgatctgttcattcgatctttgcctacatgtaagtttatat |
34120482 |
T |
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