View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_high_26 (Length: 246)
Name: NF19141_high_26
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30891368 - 30891140
Alignment:
| Q |
1 |
tgttgttacgacatttacaagtaaagaagaagacgctgaactaatgcccagattggacaaaagtgctccaactcctgcttgatcaagtatttgtggagca |
100 |
Q |
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| T |
30891368 |
tgttgttacgacatttacaagtaaagaagaagacgctgaactaatgcccagattggacaaaagtgctccaactcctgcttgatcaagtatttgtggagca |
30891269 |
T |
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| Q |
101 |
tagaatataaatccatttataccagaagcctgcaatgtagattatttttcagaatccaagaaaagaatctaataaaatagttgaatgtaaccacgttgtc |
200 |
Q |
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| T |
30891268 |
tagaatataaatccatttataccagaagcctgcaatgtagattatttttcagaatccaagaaaagaatctaataaaatagttgaatgtaaccacgttgtc |
30891169 |
T |
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| Q |
201 |
agtgtcatttcaatgtcagacaccaaaca |
229 |
Q |
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| T |
30891168 |
agtgtcatttcaatgtcagacaccaaaca |
30891140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 9951282 - 9951426
Alignment:
| Q |
13 |
atttacaagtaaagaagaagacgctgaactaatgcccagattggacaaaagtgctccaactcctgcttgatcaagtatttgtggagcatagaatataaat |
112 |
Q |
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| T |
9951282 |
atttacaagaaaagaagcagatattgaactgatgcctaaatttgatagaagagcccctactcctgcctgctcaagaatctgaggagcatagtatagaaat |
9951381 |
T |
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| Q |
113 |
ccatttataccagaagcctgcaatgtagattat-ttttcagaatc |
156 |
Q |
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| T |
9951382 |
ccatttatgccagcagcctgcaatgtggattatattttcagaatc |
9951426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 19694238 - 19694305
Alignment:
| Q |
71 |
actcctgcttgatcaagtatttgtggagcatagaatataaatccatttataccagaagcctgcaatgt |
138 |
Q |
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| T |
19694238 |
actcctgcctgctcaagaatctgaggagcatagaatagaaatccatttatgccagcagcctgcaatgt |
19694305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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