View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19141_high_3 (Length: 735)
Name: NF19141_high_3
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_high_3 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 137 - 571
Target Start/End: Complemental strand, 13392426 - 13391999
Alignment:
| Q |
137 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaatnnnnnnnnncttatcaagagttaccaaataa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13392426 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaaaaaaaaaa---ttatcaagagttaccaaataa |
13392330 |
T |
|
| Q |
237 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13392329 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
13392230 |
T |
|
| Q |
337 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgacatgaacac |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13392229 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgtcatgaacac |
13392130 |
T |
|
| Q |
437 |
tttgtttacataccaaccacctaggatctgggtatacactcactcactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
536 |
Q |
| |
|
|||||||| ||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13392129 |
tttgtttaaataccaaacaaataggatctggttatacact----cactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
13392034 |
T |
|
| Q |
537 |
cttattaaaaagttagaatagtactactatgaaca |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13392033 |
attattaaaaagttagaatagtactactatgaaca |
13391999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 572 - 711
Target Start/End: Complemental strand, 13391961 - 13391819
Alignment:
| Q |
572 |
tattttgagctagcaagagaggcttgtgttggaatttaacgtaaatttcttcaagaatattaacctacttagcttgttttggtggtgttgccttgagact |
671 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||| |||| |||| ||| ||||| |
|
|
| T |
13391961 |
tatttagagctagcaagagaggcttgtgttggaatttaacgtaaattttttc---aaaattaacctacttaacttgttctggtaatgttatcttaagact |
13391865 |
T |
|
| Q |
672 |
ttaaagtgtgttac------tttcgaagtctcaactttgattcttt |
711 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
13391864 |
ttaaagtgcgttaccttcgatttcaaagtctcaactttgattcttt |
13391819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 13392545 - 13392498
Alignment:
| Q |
18 |
ttatgcatgctaattgctaaggtattggactatccaatttgctcttgg |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13392545 |
ttatgcatgctaattgctaaggtattggacaatccaatttgctcttgg |
13392498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 714
Target Start/End: Complemental strand, 29592 - 29506
Alignment:
| Q |
628 |
atattaacctacttagcttgttttggtggtgttgccttgagactttaaagtgtgttactttcgaagtctcaactttgattctttctg |
714 |
Q |
| |
|
||||||| |||||||| ||| | |||||||||| ||||||||||| |||||||| || || |||||||| ||||||||| |||| |
|
|
| T |
29592 |
atattaatctacttaggttggtatggtggtgttcgcttgagactttggagtgtgtttctctcaaagtctcatgtttgattctctctg |
29506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University