View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_high_31 (Length: 204)

Name: NF19141_high_31
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_high_31
NF19141_high_31
[»] chr8 (37 HSPs)
chr8 (1-112)||(6599222-6599333)
chr8 (1-112)||(6674675-6674786)
chr8 (1-112)||(30143593-30143708)
chr8 (7-112)||(12702431-12702539)
chr8 (1-110)||(41366420-41366532)
chr8 (20-112)||(15213062-15213155)
chr8 (33-112)||(5689556-5689635)
chr8 (20-112)||(4731934-4732026)
chr8 (113-183)||(14750281-14750351)
chr8 (1-112)||(40321329-40321442)
chr8 (1-97)||(44304108-44304208)
chr8 (24-94)||(34254149-34254219)
chr8 (11-112)||(1345176-1345277)
chr8 (32-112)||(18105876-18105956)
chr8 (24-94)||(34256325-34256395)
chr8 (4-121)||(43036682-43036800)
chr8 (1-114)||(4733959-4734077)
chr8 (2-112)||(33352404-33352518)
chr8 (1-95)||(42498448-42498546)
chr8 (30-97)||(19945174-19945241)
chr8 (24-97)||(1746034-1746107)
chr8 (1-108)||(3303474-3303585)
chr8 (24-93)||(17982933-17983002)
chr8 (1-95)||(27811531-27811631)
chr8 (6-112)||(8154042-8154147)
chr8 (32-112)||(4743027-4743108)
chr8 (17-114)||(8965490-8965585)
chr8 (2-112)||(19491503-19491616)
chr8 (30-93)||(31218543-31218606)
chr8 (32-113)||(29796130-29796209)
chr8 (31-113)||(2628026-2628109)
chr8 (6-112)||(32901989-32902094)
chr8 (1-113)||(10015328-10015444)
chr8 (40-112)||(7493284-7493352)
chr8 (32-114)||(11711803-11711884)
chr8 (32-106)||(3073686-3073758)
chr8 (1-112)||(4162718-4162832)
[»] chr2 (38 HSPs)
chr2 (1-112)||(723547-723661)
chr2 (1-112)||(14633628-14633742)
chr2 (1-112)||(34139573-34139687)
chr2 (1-114)||(2334216-2334332)
chr2 (1-112)||(42362599-42362713)
chr2 (1-112)||(24885839-24885953)
chr2 (1-110)||(11067554-11067667)
chr2 (1-112)||(36987875-36987990)
chr2 (1-112)||(33162254-33162369)
chr2 (1-94)||(5723074-5723171)
chr2 (24-112)||(6594804-6594892)
chr2 (24-112)||(17057169-17057257)
chr2 (24-112)||(17085152-17085240)
chr2 (16-104)||(38312512-38312600)
chr2 (33-112)||(36773847-36773926)
chr2 (1-112)||(14202224-14202338)
chr2 (1-114)||(11151393-11151510)
chr2 (35-112)||(11690778-11690856)
chr2 (24-97)||(36205480-36205553)
chr2 (1-112)||(29868122-29868237)
chr2 (1-112)||(39285088-39285202)
chr2 (24-93)||(45100034-45100103)
chr2 (11-116)||(17489954-17490060)
chr2 (11-112)||(11049812-11049912)
chr2 (1-112)||(36317813-36317928)
chr2 (29-93)||(4484147-4484211)
chr2 (31-114)||(32289855-32289939)
chr2 (30-93)||(4502952-4503015)
chr2 (1-112)||(2838199-2838313)
chr2 (34-110)||(13122049-13122124)
chr2 (42-93)||(30833646-30833697)
chr2 (17-70)||(12123434-12123487)
chr2 (62-112)||(26354127-26354176)
chr2 (32-112)||(41455199-41455278)
chr2 (58-111)||(45727249-45727305)
chr2 (37-114)||(41446426-41446502)
chr2 (81-112)||(42019685-42019716)
chr2 (8-69)||(26353434-26353495)
[»] chr5 (33 HSPs)
chr5 (2-112)||(5887235-5887348)
chr5 (2-112)||(31183228-31183341)
chr5 (6-98)||(42428244-42428337)
chr5 (1-112)||(30682722-30682838)
chr5 (20-113)||(39468347-39468441)
chr5 (1-116)||(538274-538393)
chr5 (24-113)||(33831958-33832047)
chr5 (1-112)||(42426035-42426150)
chr5 (6-112)||(534020-534127)
chr5 (11-112)||(8565748-8565849)
chr5 (1-112)||(28750455-28750570)
chr5 (24-112)||(16649635-16649723)
chr5 (1-111)||(13240005-13240118)
chr5 (1-112)||(13488454-13488569)
chr5 (33-112)||(3075549-3075629)
chr5 (30-97)||(30182874-30182941)
chr5 (24-96)||(25413040-25413112)
chr5 (2-112)||(19806617-19806729)
chr5 (31-95)||(16409766-16409830)
chr5 (30-94)||(36073861-36073925)
chr5 (1-95)||(37439395-37439494)
chr5 (42-112)||(9789021-9789092)
chr5 (1-110)||(32637077-32637190)
chr5 (30-95)||(13343346-13343411)
chr5 (42-114)||(18441439-18441512)
chr5 (1-112)||(42927146-42927260)
chr5 (58-112)||(40147555-40147610)
chr5 (31-112)||(26178173-26178255)
chr5 (58-114)||(38747298-38747355)
chr5 (31-97)||(26171053-26171119)
chr5 (6-109)||(42309827-42309930)
chr5 (6-71)||(16452337-16452402)
chr5 (58-90)||(28278609-28278641)
[»] chr1 (44 HSPs)
chr1 (1-112)||(40122001-40122115)
chr1 (1-112)||(8550584-8550699)
chr1 (24-112)||(49918630-49918718)
chr1 (4-112)||(833970-834081)
chr1 (1-112)||(28223221-28223336)
chr1 (1-112)||(50166980-50167094)
chr1 (2-112)||(196710-196823)
chr1 (11-112)||(3846921-3847022)
chr1 (1-112)||(28265359-28265473)
chr1 (33-112)||(45644158-45644237)
chr1 (1-114)||(1833762-1833878)
chr1 (1-112)||(10925475-10925590)
chr1 (2-95)||(50169032-50169128)
chr1 (1-112)||(13137780-13137895)
chr1 (1-112)||(28220026-28220141)
chr1 (8-113)||(927784-927887)
chr1 (11-108)||(3189611-3189708)
chr1 (11-108)||(3198428-3198525)
chr1 (11-108)||(3207267-3207364)
chr1 (24-112)||(37559664-37559753)
chr1 (20-112)||(44455436-44455528)
chr1 (30-97)||(20762954-20763021)
chr1 (32-110)||(13659153-13659231)
chr1 (1-112)||(23555071-23555185)
chr1 (5-111)||(30476247-30476357)
chr1 (24-112)||(31659518-31659606)
chr1 (24-84)||(3157145-3157205)
chr1 (48-112)||(37503362-37503426)
chr1 (5-112)||(4552448-4552559)
chr1 (2-112)||(41361165-41361278)
chr1 (30-115)||(13316148-13316234)
chr1 (32-112)||(16455904-16455984)
chr1 (17-110)||(15820569-15820659)
chr1 (42-95)||(51765697-51765750)
chr1 (66-112)||(19752985-19753032)
chr1 (1-112)||(46065166-46065278)
chr1 (11-113)||(8870526-8870629)
chr1 (42-89)||(40282680-40282727)
chr1 (58-107)||(19754787-19754837)
chr1 (32-70)||(36683897-36683935)
chr1 (34-112)||(1050331-1050408)
chr1 (42-74)||(20622071-20622103)
chr1 (58-94)||(31490293-31490328)
chr1 (80-112)||(37282498-37282530)
[»] chr7 (45 HSPs)
chr7 (1-112)||(47675936-47676051)
chr7 (1-112)||(8153591-8153705)
chr7 (24-112)||(41648814-41648902)
chr7 (1-114)||(19502432-19502549)
chr7 (1-112)||(23555294-23555410)
chr7 (20-114)||(35854192-35854287)
chr7 (1-113)||(41317237-41317353)
chr7 (30-111)||(48489717-48489798)
chr7 (20-112)||(27348093-27348185)
chr7 (1-112)||(38671025-38671139)
chr7 (6-112)||(14069633-14069740)
chr7 (6-112)||(14379661-14379768)
chr7 (1-112)||(23344222-23344332)
chr7 (1-113)||(25616108-25616224)
chr7 (1-112)||(47673744-47673859)
chr7 (1-112)||(18126899-18127015)
chr7 (33-112)||(36146212-36146291)
chr7 (24-97)||(29991333-29991406)
chr7 (24-119)||(31732761-31732857)
chr7 (1-99)||(495801-495902)
chr7 (32-112)||(26417604-26417685)
chr7 (24-112)||(48491856-48491944)
chr7 (30-93)||(4179059-4179122)
chr7 (6-109)||(12096969-12097071)
chr7 (4-113)||(31105199-31105308)
chr7 (24-108)||(43864524-43864609)
chr7 (14-112)||(4586431-4586530)
chr7 (32-112)||(1113940-1114021)
chr7 (1-112)||(24525306-24525421)
chr7 (29-120)||(48409092-48409183)
chr7 (28-93)||(25766776-25766841)
chr7 (1-112)||(30024562-30024671)
chr7 (32-114)||(30843284-30843365)
chr7 (58-112)||(6430441-6430496)
chr7 (1-109)||(23564874-23564980)
chr7 (58-112)||(4510339-4510394)
chr7 (58-112)||(4512181-4512236)
chr7 (58-110)||(2360774-2360827)
chr7 (58-112)||(22270266-22270321)
chr7 (58-112)||(30814715-30814770)
chr7 (32-112)||(36574324-36574403)
chr7 (40-112)||(2580199-2580269)
chr7 (42-95)||(24790302-24790355)
chr7 (58-90)||(6359768-6359800)
chr7 (42-90)||(43503974-43504022)
[»] chr4 (38 HSPs)
chr4 (1-112)||(12743728-12743840)
chr4 (14-110)||(56178438-56178534)
chr4 (1-112)||(5872071-5872183)
chr4 (1-112)||(45686987-45687102)
chr4 (1-112)||(36463196-36463310)
chr4 (32-112)||(48893443-48893523)
chr4 (1-112)||(48143301-48143417)
chr4 (1-112)||(26175436-26175551)
chr4 (1-112)||(46147195-46147310)
chr4 (1-109)||(47038219-47038330)
chr4 (1-112)||(12739353-12739465)
chr4 (24-112)||(52082463-52082551)
chr4 (26-97)||(29999644-29999715)
chr4 (1-112)||(34570214-34570329)
chr4 (24-114)||(54199706-54199796)
chr4 (24-112)||(52095162-52095250)
chr4 (1-112)||(29254747-29254861)
chr4 (24-97)||(5369897-5369970)
chr4 (30-114)||(37740911-37740996)
chr4 (32-110)||(52467159-52467238)
chr4 (32-112)||(9927258-9927339)
chr4 (1-112)||(31474400-31474512)
chr4 (32-110)||(37229531-37229608)
chr4 (8-112)||(4588215-4588320)
chr4 (1-114)||(6541985-6542098)
chr4 (29-91)||(13992112-13992174)
chr4 (58-112)||(50262487-50262542)
chr4 (32-112)||(5207651-5207730)
chr4 (58-112)||(41639746-41639801)
chr4 (17-112)||(24969936-24970030)
chr4 (66-112)||(36994851-36994898)
chr4 (32-93)||(48142206-48142266)
chr4 (58-90)||(2210040-2210072)
chr4 (42-86)||(31495130-31495174)
chr4 (34-71)||(5280635-5280672)
chr4 (1-66)||(51338327-51338392)
chr4 (55-114)||(34496053-34496110)
chr4 (34-108)||(37754777-37754850)
[»] chr3 (42 HSPs)
chr3 (1-112)||(22834807-22834921)
chr3 (24-112)||(40734777-40734865)
chr3 (20-112)||(40735658-40735750)
chr3 (1-112)||(44700284-44700398)
chr3 (33-112)||(9666270-9666349)
chr3 (20-114)||(37408735-37408829)
chr3 (24-112)||(9581563-9581652)
chr3 (24-97)||(9635939-9636012)
chr3 (1-112)||(23391712-23391827)
chr3 (20-112)||(29813337-29813430)
chr3 (14-113)||(2074882-2074980)
chr3 (2-112)||(31314695-31314808)
chr3 (30-112)||(761130-761211)
chr3 (1-112)||(29196189-29196305)
chr3 (26-112)||(51399096-51399182)
chr3 (24-112)||(7762546-7762635)
chr3 (32-112)||(27305519-27305597)
chr3 (24-112)||(5236257-5236345)
chr3 (24-95)||(45095443-45095514)
chr3 (24-113)||(9634620-9634709)
chr3 (24-97)||(19683703-19683776)
chr3 (1-112)||(39153164-39153279)
chr3 (24-112)||(7764745-7764834)
chr3 (5-113)||(21350810-21350918)
chr3 (1-112)||(23410131-23410246)
chr3 (36-112)||(37406981-37407057)
chr3 (30-97)||(5257959-5258026)
chr3 (32-99)||(16499302-16499369)
chr3 (30-114)||(29682642-29682728)
chr3 (24-112)||(29811148-29811237)
chr3 (29-97)||(5260138-5260206)
chr3 (17-112)||(32891363-32891458)
chr3 (32-112)||(51351941-51352020)
chr3 (29-95)||(23199954-23200020)
chr3 (39-95)||(23197761-23197817)
chr3 (58-112)||(47304575-47304629)
chr3 (42-90)||(801388-801436)
chr3 (67-112)||(4160059-4160105)
chr3 (59-112)||(31340018-31340071)
chr3 (58-90)||(6095414-6095446)
chr3 (58-90)||(43403554-43403586)
chr3 (58-109)||(34491505-34491557)
[»] chr6 (26 HSPs)
chr6 (1-112)||(5408869-5408985)
chr6 (1-112)||(5413194-5413310)
chr6 (32-112)||(26954091-26954171)
chr6 (32-112)||(28137211-28137291)
chr6 (1-86)||(9182857-9182946)
chr6 (1-110)||(3038729-3038842)
chr6 (30-112)||(16452127-16452210)
chr6 (24-114)||(31404472-31404563)
chr6 (24-90)||(5406025-5406091)
chr6 (24-90)||(5410350-5410416)
chr6 (1-94)||(33160169-33160265)
chr6 (30-112)||(16569305-16569389)
chr6 (30-113)||(30834332-30834416)
chr6 (31-97)||(2171342-2171408)
chr6 (55-112)||(22963508-22963566)
chr6 (55-112)||(23824827-23824885)
chr6 (58-112)||(602903-602958)
chr6 (6-112)||(14521478-14521588)
chr6 (31-90)||(3072579-3072638)
chr6 (42-89)||(412387-412434)
chr6 (48-112)||(257245-257308)
chr6 (58-90)||(17758346-17758378)
chr6 (59-90)||(5043951-5043982)
chr6 (58-90)||(3808518-3808550)
chr6 (58-90)||(17763313-17763345)
chr6 (58-90)||(21589252-21589284)
[»] scaffold0006 (1 HSPs)
scaffold0006 (32-110)||(148914-148992)
[»] scaffold0016 (1 HSPs)
scaffold0016 (2-95)||(114857-114955)
[»] scaffold0066 (1 HSPs)
scaffold0066 (24-112)||(20216-20303)
[»] scaffold0286 (1 HSPs)
scaffold0286 (31-97)||(11853-11919)
[»] scaffold0002 (1 HSPs)
scaffold0002 (31-97)||(434821-434887)
[»] scaffold1668 (1 HSPs)
scaffold1668 (32-112)||(1301-1382)
[»] scaffold0491 (2 HSPs)
scaffold0491 (40-95)||(10976-11031)
scaffold0491 (40-95)||(8550-8605)
[»] scaffold1519 (1 HSPs)
scaffold1519 (40-97)||(1212-1269)
[»] scaffold0466 (1 HSPs)
scaffold0466 (58-90)||(7646-7678)
[»] scaffold0176 (1 HSPs)
scaffold0176 (58-90)||(17817-17849)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6599222 - 6599333
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||     
T  6599222 ctaggtgttgttattattgttgtttgtgttcactttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattttgagtcc 6599321  T
Q  101 gaattcacaaca 112  Q
    ||||||||||||    
T  6599322 gaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6674675 - 6674786
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||     
T  6674675 ctaggtgttgttattattgttgtttgtgttcactttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattttgagtcc 6674774  T
Q  101 gaattcacaaca 112  Q
    ||||||||||||    
T  6674775 gaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30143593 - 30143708
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30143593 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttga 30143692  T
Q  97 gtctgaattcacaaca 112  Q
    ||||||||||||||||    
T  30143693 gtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 12702539 - 12702431
Alignment:
Q  7 gttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaa 103  Q
    ||||||||||||||||||   |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||    
T  12702539 gttgttattattgttgttgcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgagtccgaa 12702440  T
Q  104 ttcacaaca 112  Q
    |||||||||    
T  12702439 ttcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41366532 - 41366420
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||| ||   |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41366532 ctaggtgttgttattgttgttattgcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 41366433  T
Q  98 tctgaattcacaa 110  Q
    || ||||||||||    
T  41366432 tccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 15213062 - 15213155
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15213062 ttgtttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

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Target: chr8; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 5689556 - 5689635
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5689556 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtcggaattcacaaca 5689635  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 4731934 - 4732026
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  4731934 ttgtttgtgttcactttgatatcggttactactttcctttgctccacacatcattgtttgtattggtgtgattttgagttcgaattcacaaca 4732026  T

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Target: chr8; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 14750281 - 14750351
Alignment:
Q  113 gtgttcataggtggttgggaatctcaacggttcagccctcatgatattggagagcatggtttgtgattcgg 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14750281 gtgttcatagctggttgggaatctcaacggttcagccctcatgatattggagagcatggtttgtgattcgg 14750351  T

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Target: chr8; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40321329 - 40321442
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | |||||||||||| || |||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  40321329 ctaggtgttgttattattgttgttgcttgtgtttactttgatattgattgctactttcctttgctccacatatcatagtttgtatt-gtgtgattttgag 40321427  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  40321428 tcggaattcacaaca 40321442  T

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Target: chr8; HSP #11
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 44304108 - 44304208
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  44304108 ctaggtgttgttattgttgattattgcttgtgctcactttaatattggttactactttcctttgctccacacatcatagtatgtattggtgtgattttga 44304207  T
Q  97 g 97  Q
    |    
T  44304208 g 44304208  T

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Target: chr8; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 34254219 - 34254149
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  34254219 ttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgttttt 34254149  T

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Target: chr8; HSP #13
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 1345277 - 1345176
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||| |||||||||||| | |||||||||||||||||||||| ||||||||||||| || || ||||||||| |||||||||||| || ||||||||||    
T  1345277 ttattgttgttgtttgtgtttactttgatattggttactactttcctttgctccacagattattgtttgtatttgtgtgattttgaatccgaattcacaa 1345178  T
Q  111 ca 112  Q
    ||    
T  1345177 ca 1345176  T

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Target: chr8; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 18105956 - 18105876
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  18105956 actttaatattggttactactttcctttgctctacacatcatagtttgtattagtgtgattttgagtctgaattcataaca 18105876  T

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Target: chr8; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 34256395 - 34256325
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  34256395 ttgtgctcactttaatattggttactactttcctttgctccacacatcatagtttgtattggtgtgttttt 34256325  T

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Target: chr8; HSP #16
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 43036682 - 43036800
Alignment:
Q  4 ggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctga 102  Q
    |||||||||||| |||||| ||||| | ||||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||| |||||||||  |    
T  43036682 ggtgttgttattgttgttgcttgtgtttactttgaaattggttactactttcctttgctccacacatcattttttgtattggtgtgagttttgagtccaa 43036781  T
Q  103 attcacaacagtgttcata 121  Q
    ||||| |||| | ||||||    
T  43036782 attcataacaattttcata 43036800  T

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Target: chr8; HSP #17
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4733959 - 4734077
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatca-tagtttgtattggtgtgattttg 95  Q
    ||||||||||||||| |||    ||| ||||| ||| |||||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||    
T  4733959 ctaggtgttgttattgttgattattgcttgtgttcattttgatattggttactactttcctttgctccacacatcattggtttgtattggtgtaattttg 4734058  T
Q  96 agtctgaattcacaacagt 114  Q
    | || ||||||||||||||    
T  4734059 aatccgaattcacaacagt 4734077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 33352404 - 33352518
Alignment:
Q  2 taggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||| |||    ||| ||||| |||||||||||||||||| ||||| ||||||||||||| |||||| ||| ||||||||||||||||||    
T  33352404 taggtgttgttattgttgattattgcttgtgttcactttgatattggttattactttcctttgctccacatatcataatttatattggtgtgattttgag 33352503  T
Q  98 tctgaattcacaaca 112  Q
    |  ||||||||||||    
T  33352504 tacgaattcacaaca 33352518  T

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Target: chr8; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42498448 - 42498546
Alignment:
Q  1 ctaggtgttgttatt----attgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||||||    ||| ||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  42498448 ctaggtgttgttattgttaattattgcttgtgttcactttgatattggttgctactttcctttgctccacacatcatattttgtattggtgtgattttg 42498546  T

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Target: chr8; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 19945241 - 19945174
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  19945241 tcactttgttattggttactactttcctttgctccacacatcaaagtttgtattggtgtgattttgag 19945174  T

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Target: chr8; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 1746107 - 1746034
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  1746107 ttgtgttcactttgttattggttactactttcctttactccacacatcatagttcgtattggtgtgattttgag 1746034  T

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Target: chr8; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3303585 - 3303474
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||||| |||||||||||||||   |||| |   ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||    
T  3303585 ctaggtgtagttattattgttgttgcttgtgtttgttttgatattggttaccactttcctttgctccacacatcatagtttgtattggtgtgagatttga 3303486  T
Q  97 gtctgaattcac 108  Q
    ||| ||||||||    
T  3303485 gtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 17982933 - 17983002
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  17982933 ttgtgttcactttgttattggttactacgttcctttgctccacacatcatagtttgtattggtgtgattt 17983002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27811531 - 27811631
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatc--atagtttgtattggtgtgatttt 94  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||||||    
T  27811531 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttcctccacacatcatatagtttgtattggtgtgatttt 27811630  T
Q  95 g 95  Q
    |    
T  27811631 g 27811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 8154042 - 8154147
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaatt 105  Q
    |||| ||||| |||||| ||||| | |||||||||||| ||||||||| ||||| || ||||||||||||||| |||| ||||||||||||| | |||||    
T  8154042 tgttattattgttgttgcttgtggttactttgatattgattactactttcctttacttcacacatcatagttt-tattagtgtgattttgagcccgaatt 8154140  T
Q  106 cacaaca 112  Q
    |||||||    
T  8154141 cacaaca 8154147  T

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Target: chr8; HSP #26
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 4743108 - 4743027
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||||  |||||||| ||||||||||||    
T  4743108 actttggtattggttaccactttcctttgctccacacattatagtttgtattggtgtgagatttgagtccgaattcacaaca 4743027  T

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Target: chr8; HSP #27
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 8965585 - 8965490
Alignment:
Q  17 ttgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    |||||| ||||| | |||||||||||||||||||| | |||| ||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  8965585 ttgttgcttgtggttactttgatattggttactacgttcctt-gctccacgcatcatagttt-tattggtgtgattttgagttcgaattcacaacagt 8965490  T

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Target: chr8; HSP #28
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 19491616 - 19491503
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgag 97  Q
    |||||||||||||| ||||||||   |||| | |||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||  || |||||||    
T  19491616 taggtgttgttattgttgttgttacttgtgtttactttgatattgattaatactttcctttgctccacacatcatagttt-tattggttagagttttgag 19491518  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  19491517 tccgaattcacaaca 19491503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 31218543 - 31218606
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  31218543 tcactttgttattggttgctactttcctttgctccacacatcatagtttatattggtgtgattt 31218606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 29796209 - 29796130
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacag 113  Q
    ||||||||| |||||| ||||||| |||||||||||||||| | |||  ||||||||||| |||||||||||||||||||||    
T  29796209 actttgatactggttattacttccttttgctccacacatcaaaattt--attggtgtgatgttgagtctgaattcacaacag 29796130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 2628026 - 2628109
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacag 113  Q
    ||||||| || |||||||||||| ||||||||||||||||| || |||||||||||||| ||| ||| || |||||||||||||    
T  2628026 cactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggtttcgagatcggaattcacaacag 2628109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 32902094 - 32901989
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttcccttt-gctccacacatcatagtttgtattggtgtgattttgagtctgaat 104  Q
    ||||||| || |||||||||| | |  |||||||||| ||||||||||| |||| ||||||||||||  |||||  |||||| |||||||||||| ||||    
T  32902094 tgttgttgttgttgttgtttgaggttgctttgatattagttactacttctcttttgctccacacatctaagttt--attggtctgattttgagtccgaat 32901997  T
Q  105 tcacaaca 112  Q
    ||||||||    
T  32901996 tcacaaca 32901989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10015328 - 10015444
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||| |||||||||||||| ||   |||| |||||||||||||||||| ||||| ||| ||||||||||||| | ||||  |||||||| | |||| |    
T  10015328 ctaggtattgttattattgtttttgcttgtgttcactttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttaa 10015427  T
Q  97 gtctgaattcacaacag 113  Q
     || |||||||||||||    
T  10015428 atccgaattcacaacag 10015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 7493284 - 7493352
Alignment:
Q  40 attggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||    
T  7493284 attgattactacttcc-tttgctccacacatcatagttt-tattggtgtgatttt--gtccgaattcacaaca 7493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 11711884 - 11711803
Alignment:
Q  32 actttgatattggttactacttcccttt-gctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    ||||| || ||||||||||||| ||||| ||||||||||||  |||||  |||||||| |||||||||| ||||||||||||||    
T  11711884 acttttatcttggttactactttccttttgctccacacatctaagttt--attggtgtaattttgagtccgaattcacaacagt 11711803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 3073758 - 3073686
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattc 106  Q
    ||||||||| |||||| ||||| ||||||||||||| || ||||||  |||||||||| ||||||||| ||||||    
T  3073758 actttgatactggttattactttcctttgctccacatatgatagtt--tattggtgtgtttttgagtccgaattc 3073686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4162718 - 4162832
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatatt----ggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    |||||| || ||||| |||||||||||| | |||||||||||    |||||| | ||  ||||||||| |||||||| |||| || |||| |||||||||    
T  4162718 ctaggttttattattgttgttgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tactggtatgattttga 4162816  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  4162817 gtccgaattcacaaca 4162832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 723661 - 723547
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  723661 ctaggtgttgttattattgttgttgattgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 723562  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  723561 tccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 14633742 - 14633628
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  14633742 ctaggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgcttcacacatcatagtttgtattggtgtgattttgag 14633643  T
Q  98 tctgaattcacaaca 112  Q
    |||||| ||||||||    
T  14633642 tctgaaatcacaaca 14633628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34139687 - 34139573
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||| |||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34139687 ctaggtcttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 34139588  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  34139587 tccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 2334332 - 2334216
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  2334332 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactactttcctttgcttcacacatcatagtttgtattggtgtgattttgag 2334233  T
Q  98 tctgaattcacaacagt 114  Q
    |||||||||||||||||    
T  2334232 tctgaattcacaacagt 2334216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42362599 - 42362713
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   || | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42362599 ctaggtgttgttattattgttgttgcttgagttcactttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 42362698  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  42362699 tccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 24885839 - 24885953
Alignment:
Q  1 ctaggtgttgttattattgttgttt---gtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||| ||||||||||   ||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  24885839 ctaggtgttgttatcattgttgtttcttgtgttcactttgatattggttactattttcctttgctacacacatcatagtttgtattggtgtgattttgag 24885938  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  24885939 tccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11067554 - 11067667
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgta-ttggtgtgattttga 96  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||    
T  11067554 ctaggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgaatttggtgtaattttga 11067653  T
Q  97 gtctgaattcacaa 110  Q
    | ||||||||||||    
T  11067654 ggctgaattcacaa 11067667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36987990 - 36987875
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36987990 ctaggtgttgttattgttgattattgcttgtgtttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttga 36987891  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  36987890 gtccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33162369 - 33162254
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgt-gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||||||||||||   ||| | |  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  33162369 ctaggtgttgttattattgttgttgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttga 33162270  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  33162269 gtccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5723171 - 5723074
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    ||||||||||||||| |||    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  5723171 ctaggtgttgttattgttgattattgtttgtgctcactttgatattggttactactttactttgctccacacatcatagtttgtattggtgtgatttt 5723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 6594892 - 6594804
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  6594892 ttgtgttcactttgatattggttactactttactttgctccacacatcatagtttgtattggtgtgattttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 17057257 - 17057169
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17057257 ttgtgttcactttgatattggttactactttcctttgctctacacatcatattttgtattggtgtgattttgagtccgaattcacaaca 17057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 17085240 - 17085152
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17085240 ttgtgttcactttgatattggttactactttcctttgctctacacatcatattttgtattggtgtgattttgagtccgaattcacaaca 17085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 38312512 - 38312600
Alignment:
Q  16 attgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaat 104  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  38312512 attgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcattgtttatattggtgtgattttgagtccgaat 38312600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 36773847 - 36773926
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  36773847 ctttgatattggttactactttcatttgctccacacatcatagtttgtattggtgtgattttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 14202338 - 14202224
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   || | |||||||||||||| ||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||     
T  14202338 ctaggtgttgttattattgttgttgcttgcgttcactttgatattgattactactttcctttactccacatatcatagtttgtgttggtatgattttgac 14202239  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  14202238 tccgaattcacaaca 14202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11151510 - 11151393
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||| |||||||||||||||||||   |||| |||||||||||||| |||||||||   |||||||||||||||||||||||||||||| ||| ||||||    
T  11151510 ctagctgttgttattattgttgttgcttgtgttcactttgatattgattactacttttatttgctccacacatcatagtttgtattggtatgagttttga 11151411  T
Q  97 gtctgaattcacaacagt 114  Q
    ||  ||||||||||||||    
T  11151410 gttcgaattcacaacagt 11151393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 11690778 - 11690856
Alignment:
Q  35 ttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11690778 ttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 11690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 36205553 - 36205480
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  36205553 ttgtgttcactttgttattggttactactttcctttgctccacacatcatagtttgtattagtgtgattttgag 36205480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29868122 - 29868237
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtg-attttga 96  Q
    ||||||||||||||||||||||||   |||| | ||||| | |||| |||||||||  ||||||||||||||||||||||||||||| |||| | |||||    
T  29868122 ctaggtgttgttattattgttgttgcttgtgtttactttaaaattgattactacttttctttgctccacacatcatagtttgtattgctgtgaaatttga 29868221  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  29868222 gtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39285088 - 39285202
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| | ||||||| ||||||||||||||  |||||||||||||||||||| |||||||||| ||| |||| |    
T  39285088 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactacttttctttgctccacacatcatag-ttgtattggtatgagttttaa 39285186  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  39285187 gtccgaattcacaaca 39285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 45100034 - 45100103
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  45100034 ttgtgttcactttgatattggttactactttcctttgctccacacatcataattcgtattggtgtgattt 45100103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 17490060 - 17489954
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctcca--cacatcatagtttgtattggtgtgattttgagtctgaattcac 108  Q
    |||||||||||||||||| | ||||||||||||||||||| || |  ||||||||  ||||||||||||| ||||||||  |||||||||| ||||||||    
T  17490060 ttattattgttgtttgtggttactttgatattggttactattttctcttgctccacacacatcatagttt-tattggtgcaattttgagtccgaattcac 17489962  T
Q  109 aacagtgt 116  Q
    ||||||||    
T  17489961 aacagtgt 17489954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 11049812 - 11049912
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||| |||||| || || | |||||||||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||| ||| ||| ||||||    
T  11049812 ttattgttgttgcttatgattactttgatattggttactactttcttttgctccacgcatcatagttt-tattggtgtgattttgcgtccgaactcacaa 11049910  T
Q  111 ca 112  Q
    ||    
T  11049911 ca 11049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36317928 - 36317813
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||| ||||   |||| | ||||||| |||||||||||||| | |||| || ||||||||| |||||||||||||||| ||||||    
T  36317928 ctaggtgttgttattattgctgttgcttgtgtttactttgaaattggttactactttcatttgttctacacatcattgtttgtattggtgtgagttttga 36317829  T
Q  97 gtctgaattcacaaca 112  Q
    |||  |||||||||||    
T  36317828 gtccaaattcacaaca 36317813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 4484211 - 4484147
Alignment:
Q  29 ctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  4484211 ctcactttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgattt 4484147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 32289855 - 32289939
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacagt 114  Q
    ||||||| || |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||||||    
T  32289855 cactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaattcacaacagt 32289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 4503015 - 4502952
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    |||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  4503015 tcactttgttattggttactactttcctttactccacacattatagtttgtattggtgtgattt 4502952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 2838199 - 2838313
Alignment:
Q  1 ctaggtgttgttattattgt---tgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||| ||||   |||||||| | ||||||||| |||||||||||| ||||| |||||||||||| ||| | ||||||||||| |||||     
T  2838199 ctaggtgttgttattgttgttgttgtttgtgtttactttgatagtggttactactttcctttactccacacatcaaagtat-tattggtgtgagttttgt 2838297  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||| ||||||||    
T  2838298 gtccgaactcacaaca 2838313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 13122049 - 13122124
Alignment:
Q  34 tttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    |||||||||| ||| |||||  |||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  13122049 tttgatattgattagtacttttctttactccacacatcatagttt-tattggtgtgattttgtgtccgaattcacaa 13122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 30833646 - 30833697
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  30833646 tggttactactttcctttgctccacacatcatatttcgtattggtgtgattt 30833697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 12123487 - 12123434
Alignment:
Q  17 ttgttgtttgtgctcactttgatattggttactacttccctttgctccacacat 70  Q
    |||||||||| | | |||||||||||||||||||||| ||||||||||||||||    
T  12123487 ttgttgtttgaggttactttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 26354127 - 26354176
Alignment:
Q  62 tccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  26354127 tccacacatcatagttt-tattggtgtgattttgagtccgaattcataaca 26354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 41455199 - 41455278
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||||| ||||||||||||| |||||||||||  ||  ||||  ||||| ||||| ||||||||||||||||||||||    
T  41455199 actttgatatcggttactacttccttttgctccacatgtctaagtt--tattgttgtgagttttgagtctgaattcacaaca 41455278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 45727249 - 45727305
Alignment:
Q  58 ttgctccacacatcata--gtttgtattggtgtgat-tttgagtctgaattcacaac 111  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  45727249 ttgctccacacatcatatagtttgtattggtgtgaaatttgagtctgaattcacaac 45727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 41446426 - 41446502
Alignment:
Q  37 gatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaacagt 114  Q
    |||| |||||||||||| | ||||||||||||||   |||||  |||| ||||| ||||||||||||||||||||||||    
T  41446426 gatactggttactactttcttttgctccacacatttaagttt--attgttgtgagttttgagtctgaattcacaacagt 41446502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 42019716 - 42019685
Alignment:
Q  81 attggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||||||||    
T  42019716 attggtgtgattttgagtctgaattcacaaca 42019685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 26353434 - 26353495
Alignment:
Q  8 ttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacaca 69  Q
    |||||||| |||||  ||||| | ||||| |||||||||||||||| ||||||||| |||||    
T  26353434 ttgttattgttgttccttgtgattactttaatattggttactactttcctttgctctacaca 26353495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 5887348 - 5887235
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt 98  Q
    |||||||||||||||||||||||   |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  5887348 taggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccacatatcatagtttgtattggtgtgattttgagt 5887249  T
Q  99 ctgaattcacaaca 112  Q
    | ||||||||||||    
T  5887248 ccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 31183228 - 31183341
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt 98  Q
    ||||||||||||||||| |||||   |||| || |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  31183228 taggtgttgttattatttttgttgcttgtgttccctttgatattagttactactttcctttgctccacacatcatggtttgtattggtgtgattttgagt 31183327  T
Q  99 ctgaattcacaaca 112  Q
    | ||||||||||||    
T  31183328 ccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 42428337 - 42428244
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagt 98  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  42428337 tgttattattattgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagt 42428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30682838 - 30682722
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttg 95  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30682838 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttg 30682739  T
Q  96 agtctgaattcacaaca 112  Q
    |||| | ||||||||||    
T  30682738 agtccgtattcacaaca 30682722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 39468441 - 39468347
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaacag 113  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||    
T  39468441 ttgtttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaacag 39468347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 538274 - 538393
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||| |||||||||||||||||||   |||| | ||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  538274 ctagatgttgttattattgttgttgcttgtgtttactttgaaattggttattactttcctttgctccacacatcatagtttatattggtgtgagttttga 538373  T
Q  97 gtctgaattcacaacagtgt 116  Q
    |||||||||||||| |||||    
T  538374 gtctgaattcacaatagtgt 538393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 33831958 - 33832047
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacag 113  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  33831958 ttgtgttcactttgattttggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgagtccgaattcacaacag 33832047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 42426150 - 42426035
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||| ||||   |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||    
T  42426150 ctaggtgttgttattattgatgttgcttgtgttcactttgatattggttactactttcttttgctccacacatcatagtttgtatttgtgtgagttttga 42426051  T
Q  97 gtctgaattcacaaca 112  Q
    ||  ||||||||||||    
T  42426050 gttcgaattcacaaca 42426035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 534020 - 534127
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaat 104  Q
    |||| |||||||||||| |||||   ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  534020 tgttattattattgttgcttgtgtctactttgaaattggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgagtccgaat 534119  T
Q  105 tcacaaca 112  Q
    ||||||||    
T  534120 tcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 8565849 - 8565748
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||| |||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||  |||||||||    
T  8565849 ttattgttgttgcttgtgttcactttgttattggttactactttcctttgctccacacatcatagtttatattagtgtgattttgaatccaaattcacaa 8565750  T
Q  111 ca 112  Q
    ||    
T  8565749 ca 8565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28750570 - 28750455
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| | ||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  28750570 ctaggtgttgttattattgttgttgcttgtgtttactttaaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttga 28750471  T
Q  97 gtctgaattcacaaca 112  Q
    |||  |||||||||||    
T  28750470 gtccaaattcacaaca 28750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 16649723 - 16649635
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  16649723 ttgtgttcactttgattgtggttactactttcctttgctccacacatcatagtttgtattggtatgattttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13240005 - 13240118
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||||||   |||| | ||||| | |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  13240005 ctaggtgttgttattgttgttgttgcttgtgtttactttaaaattggttactactttcctttactccacacatcatagtttgtattagtgtgattttgag 13240104  T
Q  98 tctgaattcacaac 111  Q
    |  |||||||||||    
T  13240105 ttcgaattcacaac 13240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13488454 - 13488569
Alignment:
Q  1 ctaggtgttgttattattg---ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||||||||||||||||   ||| ||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||||||||||  |||||    
T  13488454 ctaggtgttgttattattgctattgattgtgttcactttgaaattggttattactttcctttactccacacatcatattttgtattggtgtgagatttga 13488553  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  13488554 gtccgaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 3075629 - 3075549
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 30182874 - 30182941
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  30182874 tcactttgttattggttactactttcctttgctccacacatcatagtttgttttggtgtgattttgag 30182941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 25413040 - 25413112
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    |||||||||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  25413040 ttgtgctcacttggatattgattactaatttcctttgctccacacatcatagttcgtattggtgtgattttga 25413112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 19806617 - 19806729
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt 98  Q
    |||||||||||||||||| | ||   | || ||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||| | ||||||||    
T  19806617 taggtgttgttattattgctattgcctatgttcactttaaaattggttactactttcctttgccccacacatcatagtttgtattggtgag-ttttgagt 19806715  T
Q  99 ctgaattcacaaca 112  Q
    | ||||||||||||    
T  19806716 ccgaattcacaaca 19806729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 16409766 - 16409830
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    ||||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  16409766 cactttgttagtggttactactttcctttgctccacacatcatactttgtattggtgtgattttg 16409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 36073925 - 36073861
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  36073925 tcactttgttattggttattactttcctttgctccacacatcatagtttgtattggtgtggtttt 36073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37439395 - 37439494
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatag---tttgtattggtgtgatttt 94  Q
    ||||||||||||||||||||||||   |||| | ||||||| |||||||||||||| | |||||||||||||||||||   |||||||||||||||||||    
T  37439395 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactactt-cttttgctccacacatcatagttttttgtattggtgtgatttt 37439493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 9789092 - 9789021
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaaca 112  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||    
T  9789092 tggttactactttcctttgctccacacatcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

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Target: chr5; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32637077 - 32637190
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||| ||||   |||| | | | ||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  32637077 ctaggtgttgttattattgatgttgcttgtgtttagtgtgaaatttgttactactttcctttactccacacatcatagtttgtattggtgtgagttttga 32637176  T
Q  97 gtctgaattcacaa 110  Q
     || ||||||||||    
T  32637177 atccgaattcacaa 32637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 13343346 - 13343411
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  13343346 tcactttgttattggttactactttcctttgctccacacatcatagttcgtattagtgtgactttg 13343411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 18441512 - 18441439
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacagt 114  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||||||    
T  18441512 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaattcacaacagt 18441439  T

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Target: chr5; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42927146 - 42927260
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||||||   |||| | ||||||||||| ||| |||||| ||||||||||||||||| | ||||   ||||| ||||||||||    
T  42927146 ctaggtgttgttattgttgttgttgcttgtgtttactttgatattagttgctactttcctttgctccacacatctttgttttcgttggtatgattttgag 42927245  T
Q  98 tctgaattcacaaca 112  Q
    |  ||||||||||||    
T  42927246 ttcgaattcacaaca 42927260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 40147555 - 40147610
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  40147555 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 26178173 - 26178255
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaaca 112  Q
    ||||||| || |||||||||||| ||||||||||||||||| || || ||||||||||| ||||||| || ||||||||||||    
T  26178173 cactttgttagtggttactactttcctttgctccacacatcttacttcgtattggtgtggttttgagatcggaattcacaaca 26178255  T

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Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 38747298 - 38747355
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaacagt 114  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||    
T  38747298 ttgctccacacatcatagtttgtattggtgtgaaatttgagtccaaattcacaacagt 38747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 26171053 - 26171119
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||| || || ||||||||| ||||||||||||||||| || || ||||||||||| |||||||    
T  26171053 cactttgttagtgcttactactttcctttgctccacacatcttacttcgtattggtgtggttttgag 26171119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 42309930 - 42309827
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaatt 105  Q
    |||||||||| |||||| ||||| | ||| |||||| |||||  |||| |||||||| || ||||| | ||||  |||| ||||||||||||||  ||||    
T  42309930 tgttgttattgttgttgcttgtgattactatgatataggttatcactttcctttgctgcatacatctttgttttcattgatgtgattttgagtcctaatt 42309831  T
Q  106 caca 109  Q
    ||||    
T  42309830 caca 42309827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 16452337 - 16452402
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatc 71  Q
    |||||||||| |||||| ||||| | || || ||||||||||||| || ||||| |||||||||||    
T  16452337 tgttgttattgttgttgcttgtgtttacgttaatattggttactattttcctttactccacacatc 16452402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 28278609 - 28278641
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||||||| |||||||||||||||    
T  28278609 ttgctccacacatcatattttgtattggtgtga 28278641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 40122115 - 40122001
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40122115 ctaggtgttgttattattgttgttgcttgtgttcacttagatattggttactactttcctttgctccacgcatcatagtttgtattggtgtgattttgag 40122016  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  40122015 tccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8550699 - 8550584
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8550699 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttga 8550600  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  8550599 gtccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 49918630 - 49918718
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49918630 ttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtctgaatttacaaca 49918718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 834081 - 833970
Alignment:
Q  4 ggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct 100  Q
    |||||||||||| ||||| ||   |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  834081 ggtgttgttattgttgttattgcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtcc 833982  T
Q  101 gaattcacaaca 112  Q
    ||||||||||||    
T  833981 gaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28223336 - 28223221
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||    
T  28223336 ctaggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcgtttgctccacacatcatagtttgtattggtctgagttttga 28223237  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  28223236 gtccgaattcacaaca 28223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 50167094 - 50166980
Alignment:
Q  1 ctaggtgttgttattattgttgttt---gtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||||||||||||||   ||| | |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  50167094 ctaggtgttgttattattgttgtttcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgttttggtgtgattttgag 50166995  T
Q  98 tctgaattcacaaca 112  Q
    |  || |||||||||    
T  50166994 ttcgagttcacaaca 50166980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 196823 - 196710
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt 98  Q
    |||||||||||||||||||||||   |||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||||    
T  196823 taggtgttgttattattgttgttgcttgtgttcactttgatattggttactattttcctttgctccacacatcataatttgtattggtgtgaatttgagt 196724  T
Q  99 ctgaattcacaaca 112  Q
      ||||||||||||    
T  196723 acgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 3847022 - 3846921
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  3847022 ttattgttgttgcttgtgttcactttgatattggttactactttcctttactccacacatcatagtttgtattagtatgattttgagtccgaattcacaa 3846923  T
Q  111 ca 112  Q
    ||    
T  3846922 ca 3846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28265473 - 28265359
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||| |||||||||||||||||||   |||| ||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  28265473 ctagatgttgttattattgttgttgcttgtgttcactttgatattggctactattttcctttactccacacatcatagtttgtattggtgtgattttgag 28265374  T
Q  98 tctgaattcacaaca 112  Q
    || |||||| |||||    
T  28265373 tccgaattcccaaca 28265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 45644237 - 45644158
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  45644237 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1833762 - 1833878
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | ||||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| |||||    
T  1833762 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttacgactttcctttactccacagatcatagtttgtattggtgtgatattgag 1833861  T
Q  98 tctgaattcacaacagt 114  Q
    || ||||||||||||||    
T  1833862 tccgaattcacaacagt 1833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 10925475 - 10925590
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  10925475 ctaggtgttgttattgttgattattgcttgtgttcactttgatattgattactactttcctttgctccacacaacatagtttgtattgttgtgattttga 10925574  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  10925575 gtccgaattcacaaca 10925590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 50169128 - 50169032
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||||||||||||||   |||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||    
T  50169128 taggtgttgttattattgttgttgtttgtgttcactttgatattggttactactttcatttgcttcacacatcatagtttgtattggtgtgattttg 50169032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 13137895 - 13137780
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| | ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  13137895 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttga 13137796  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||| ||||||    
T  13137795 gtccgaatttacaaca 13137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28220141 - 28220026
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| ||||||| ||||||||||||| ||  ||||| ||||||||||||||||||||||||||||| ||||||    
T  28220141 ctaggtgttgttattattgttgttgtttgtgttcactttaatattggttactaattttctttgttccacacatcatagtttgtattggtgtgagttttga 28220042  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  28220041 gtccgaattcacaaca 28220026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 927887 - 927784
Alignment:
Q  8 ttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattca 107  Q
    ||||| || |||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||  ||||| |||||||||||||| |||||||    
T  927887 ttgttgttgttgttgtttgtgattactttgatattggttaccacttccctttactccacacatcatagtt--tattgatgtgattttgagtccgaattca 927790  T
Q  108 caacag 113  Q
    ||||||    
T  927789 caacag 927784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 3189611 - 3189708
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcac 108  Q
    ||||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  3189611 ttattgttgttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 3198428 - 3198525
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcac 108  Q
    ||||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  3198428 ttattgttgttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 3207267 - 3207364
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcac 108  Q
    ||||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  3207267 ttattgttgttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 37559753 - 37559664
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  37559753 ttgtgttcactttgatattggttactactttcctttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaaca 37559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 44455436 - 44455528
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||| ||||||||||||||||||| ||||  |||| ||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  44455436 ttgtttgtgttcactttgatattggttaccacttttcttttctccacatatcatagtttgtattggtgtgattttgagtacgaattcacaaca 44455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 20762954 - 20763021
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20762954 tcactttgatattggttaatactttcctttgctccacacatcatagtttgtattggtgtgattttgag 20763021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 13659231 - 13659153
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  13659231 actttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23555185 - 23555071
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||||||   |||| | ||||||| |||| |||||||||  |||||||||||||||||| |||| |||||||| |||||||||    
T  23555185 ctaggtgttgttattgttgttgttgcttgtgtttactttgacattgattactacttttctttgctccacacatcattgtttctattggtgcgattttgag 23555086  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  23555085 tccgaattcacaaca 23555071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 30476357 - 30476247
Alignment:
Q  5 gtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtct 100  Q
    ||||||||||||||||||||   |||| | ||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||      
T  30476357 gtgttgttattattgttgttgcttgtgtttactttgaaattggttactactttcctttactccacacattatagtttgtattggtgtgagttttgagttc 30476258  T
Q  101 gaattcacaac 111  Q
    |||||||||||    
T  30476257 gaattcacaac 30476247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 31659518 - 31659606
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| ||| ||||||||||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  31659518 ttgtgttcattttgatattggttactacttttcttttctccacacatcatattttatattggtgtgattttgagtccgaattcacaaca 31659606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 3157145 - 3157205
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattg 84  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3157145 ttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattg 3157205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 37503426 - 37503362
Alignment:
Q  48 ctacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37503426 ctactttcctttactccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 4552559 - 4552448
Alignment:
Q  5 gtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtg-attttgagtct 100  Q
    ||||||||||||||||||||   |||| | ||||||| |||||||||||||| ||||| || ||| |||||||||||||||||||||| | ||||||||     
T  4552559 gtgttgttattattgttgttacttgtgtttactttgaaattggttactactttcctttacttcacgcatcatagtttgtattggtgtgaaatttgagtcc 4552460  T
Q  101 gaattcacaaca 112  Q
    |||||| |||||    
T  4552459 gaattcgcaaca 4552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 41361165 - 41361278
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgag 97  Q
    |||||||||||||| ||||||||   |||| | |||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||  || |||||||    
T  41361165 taggtgttgttattgttgttgttacttgtgtttactttgatattgattaatactttcctttgctccacacatcatagttt-tattggttagagttttgag 41361263  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  41361264 tccgaattcacaaca 41361278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 13316234 - 13316148
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacagtg 115  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||| || |||||||||||||||||||  | |||||||||||||||    
T  13316234 tcactttgttattgattactactttcctttgctccacacattatatttcgtattggtgtgattttgagaccggaattcacaacagtg 13316148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 16455904 - 16455984
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||| | |||||| |||| ||| | ||||  |||||||| |||||||||| ||||||||||||    
T  16455904 actttgatattggttactactttcatttgctacacaaatctttgttttcattggtgtaattttgagtccgaattcacaaca 16455984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 15820569 - 15820659
Alignment:
Q  17 ttgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    |||||| ||||| | ||||||||||| |||||||||| |||||||||||||||||  ||||  |||||||| | ||||||||| ||||||||||    
T  15820569 ttgttgcttgtgtttactttgatattagttactactttcctttgctccacacatctaagtt--tattggtgag-ttttgagtccgaattcacaa 15820659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 51765697 - 51765750
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||| |||||    
T  51765697 tggttactactttcctttgctccacacatcatatttcgtattggtgtggttttg 51765750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 19752985 - 19753032
Alignment:
Q  66 cacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||    
T  19752985 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 19753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 46065166 - 46065278
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||  | ||||||| ||||||||| |||  | ||||||||||||||| | ||||  |||| |||| |||||||    
T  46065166 ctaggtgttgttattattgttgttgcttgtatttactttga-attggttacaactatcgtttgctccacacatctttgttttcattg-tgtggttttgag 46065263  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  46065264 tccgaattcacaaca 46065278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 8870629 - 8870526
Alignment:
Q  11 ttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgt-attggtgtgattttgagtctgaattcaca 109  Q
    ||||| || ||| ||||| | ||||||||| | |||||||||| |||||| |||||||||  | |||| | ||||||||||||||||| || ||||| ||    
T  8870629 ttattgtttttgcttgtgattactttgatactagttactactttcctttgttccacacatatttgtttttcattggtgtgattttgagcctaaattcgca 8870530  T
Q  110 acag 113  Q
    ||||    
T  8870529 acag 8870526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 40282680 - 40282727
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtg 89  Q
    ||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  40282680 tggttaccactctcctttgctccacacatcatagtttgcattggtgtg 40282727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 19754787 - 19754837
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattca 107  Q
    ||||||||||||||||||||| |||||||||| | ||||| ||||||||||    
T  19754787 ttgctccacacatcatagtttctattggtgtgaaatttgaatctgaattca 19754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 36683897 - 36683935
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacat 70  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  36683897 actttgatattggttaccactttcctttgctccacacat 36683935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 1050408 - 1050331
Alignment:
Q  34 tttgatattggttactac-ttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||| |||| ||| || || ||||| |||||  |||||||||||||||||||   |||||||||||    
T  1050408 tttgatattggttactactttccttttacttcatacatcttagtt--tattggtgtgattttgagttcaaattcacaaca 1050331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 20622103 - 20622071
Alignment:
Q  42 tggttactacttccctttgctccacacatcata 74  Q
    |||||||||||| ||||||||||||||||||||    
T  20622103 tggttactactttcctttgctccacacatcata 20622071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 31490293 - 31490328
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    ||||||||||||||| |||||||||||||||||||||    
T  31490293 ttgctccacacatca-agtttgtattggtgtgatttt 31490328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 37282530 - 37282498
Alignment:
Q  80 tattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||| ||||||||||||    
T  37282530 tattggtgtgattttgagtccgaattcacaaca 37282498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47676051 - 47675936
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||     
T  47676051 ctaggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgt 47675952  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  47675951 gtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8153591 - 8153705
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||    
T  8153591 ctaggtgttgttattattgttgttgcttgtgctcactttgatattgattactactttcctttgctccacgcatcatagtttgtattagtgtgattttgag 8153690  T
Q  98 tctgaattcacaaca 112  Q
    || |||||| |||||    
T  8153691 tccgaattcccaaca 8153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 41648902 - 41648814
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41648902 ttgtgttcactttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 19502432 - 19502549
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||  | ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||    
T  19502432 ctaggtgttgttattattgttgttgcttgtatttactttgaaattggttactactttcctttgctccacacatcatagtttgtattagtgtgagttttga 19502531  T
Q  97 gtctgaattcacaacagt 114  Q
    ||||||||||||||||||    
T  19502532 gtctgaattcacaacagt 19502549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 23555294 - 23555410
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttg 95  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  23555294 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttg 23555393  T
Q  96 agtctgaattcacaaca 112  Q
    |||| ||||||||||||    
T  23555394 agtccgaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 35854192 - 35854287
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct-gaattcacaacagt 114  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  35854192 ttgtttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgagactggaattcacaacagt 35854287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41317353 - 41317237
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||    
T  41317353 ctaggtgttgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagatttga 41317254  T
Q  97 gtctgaattcacaacag 113  Q
    ||  |||||||||||||    
T  41317253 gttcgaattcacaacag 41317237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 48489717 - 48489798
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaac 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  48489717 tcactttgatattggttactactttcctttgctccacacatcatagttggtattggtgtgattttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 27348093 - 27348185
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  27348093 ttgtttgtgttcactttgatattggttgctactttcctttgctccacacatcataatttgtatttgtgtgattttgagtccgaattcacaaca 27348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38671139 - 38671025
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||| |||||||| |||   |||| |||||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  38671139 ctaggtgttgtcattattgtcgttgcttgtgttcactttgatttttgttactattttcctttgctccacacatcatagtttgtattggtgtgattttgag 38671040  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  38671039 tccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 14069740 - 14069633
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaat 104  Q
    |||| |||||||||||| ||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  14069740 tgttattattattgttgcttgtgtttactttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaat 14069641  T
Q  105 tcacaaca 112  Q
    ||||||||    
T  14069640 tcacaaca 14069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 14379768 - 14379661
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaat 104  Q
    |||| |||||||||||| ||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  14379768 tgttattattattgttgcttgtgtttactttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaat 14379669  T
Q  105 tcacaaca 112  Q
    ||||||||    
T  14379668 tcacaaca 14379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 23344222 - 23344332
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct 100  Q
    |||||| |||||||| |||||| ||||| | |||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  23344222 ctaggttttgttattgttgttgcttgtggttacttggatattggttactactttcctttgctccacacatcatagttt-tattgatgtgattttgggtct 23344320  T
Q  101 gaattcacaaca 112  Q
    ||||||||||||    
T  23344321 gaattcacaaca 23344332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25616108 - 25616224
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  25616108 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttga 25616207  T
Q  97 gtctgaattcacaacag 113  Q
    ||  | |||||||||||    
T  25616208 gtacgtattcacaacag 25616224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47673859 - 47673744
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||     
T  47673859 ctaggtgttgttattattgttgttgtttgtgttcactttgatattggttactactttcttttgttccacacatcatagtttgtattggtgtgagttttgt 47673760  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||| ||||    
T  47673759 gtccgaattcataaca 47673744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 18126899 - 18127015
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttg 95  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  18126899 ctaggtgttgttattcttgattattgcttgtgttcactttgatattgattactactttcctttactccacacatcatagtttgtattggtgtgagttttg 18126998  T
Q  96 agtctgaattcacaaca 112  Q
    |||| ||||||||||||    
T  18126999 agtccgaattcacaaca 18127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 36146291 - 36146212
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  36146291 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgagtccgaattcacaaca 36146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 29991333 - 29991406
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  29991333 ttgtgctcactttgatattggttactacttttctttgctccacacatcatagtttgtattggtgtgactttgag 29991406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 31732857 - 31732761
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaacagtgttca 119  Q
    ||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  31732857 ttgtgttcactttgaaattggttactactttcatttgctccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaacagtcttca 31732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 495902 - 495801
Alignment:
Q  1 ctaggtgttgttattattgtt---gtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| |||||   ||||||| | |||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||    
T  495902 ctaggtgttgttattgttgttattgtttgtgtttactttgatattggttactactttcctttgctccacatatcataatttgtattagtgtgattttgag 495803  T
Q  98 tc 99  Q
    ||    
T  495802 tc 495801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 26417604 - 26417685
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  26417604 actttgatattggttactactttcctttactccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 48491856 - 48491944
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||| || ||||||||||||    
T  48491856 ttgtgttcactttgatattggttactactttcctttactccgcacattatagttggtattggtgtgattttgaatccgaattcacaaca 48491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 4179059 - 4179122
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4179059 tcactttgttattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt 4179122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 12097071 - 12096969
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaatt 105  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||| |||||  ||||  ||||||||||| || ||||||||||||||||| |||||    
T  12097071 tgttgttattgttgttgattgtgttcactttgatattggttactactttcctttattccaagcatcatagtttata-tggtgtgattttgagtccgaatt 12096973  T
Q  106 caca 109  Q
    ||||    
T  12096972 caca 12096969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 31105308 - 31105199
Alignment:
Q  4 ggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctga 102  Q
    |||||||||||| |||||| ||||| | |||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||  ||    
T  31105308 ggtgttgttattgttgttgcttgtgtttactttgatattgattactactttcctttactccacacatcatagttt-tattggtgtgagttttgtgttcga 31105210  T
Q  103 attcacaacag 113  Q
    |||||||||||    
T  31105209 attcacaacag 31105199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 43864524 - 43864609
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcac 108  Q
    ||||| |||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  43864524 ttgtgttcactttgatattgattaccactttcctttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 4586431 - 4586530
Alignment:
Q  14 ttattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||| ||| ||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||    
T  4586431 ttattattgcttgtgttcactttgaaattggttaccactttcctttgctccacacatcatagtttacattggtgtgagatttgagtccgaattcacaaca 4586530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 1113940 - 1114021
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||    
T  1113940 actttgatattagttaccactttcctttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 24525421 - 24525306
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgt-gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||||||||||||   ||| | |  ||||||||||| |||||||||  ||||||| |||| |||||||||||||||| |||||||||||    
T  24525421 ctaggtgttgttattattgttgttgcttgttgtttgctttgatattgattactacttttctttgctacacatatcatagtttgtattgatgtgattttga 24525322  T
Q  97 gtctgaattcacaaca 112  Q
     | |||||||||||||    
T  24525321 atttgaattcacaaca 24525306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 48409092 - 48409183
Alignment:
Q  29 ctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct-gaattcacaacagtgttcat 120  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||| |  |||||||||||||| |||||    
T  48409092 ctcactttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgattt-gagaccagaattcacaacagttttcat 48409183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 25766841 - 25766776
Alignment:
Q  28 gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||| || |||||||||||||||    
T  25766841 gctcactttgttattggttactacttttctttgctccacacatcatatttcgtattggtgtgattt 25766776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30024671 - 30024562
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | ||||||| |||||||||||||| |||||| |     ||||||||||| ||||||| ||||||||||    
T  30024671 ctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactactttcctttgtt-----catcatagtttatattggtatgattttgag 30024577  T
Q  98 tctgaattcacaaca 112  Q
    || ||||| ||||||    
T  30024576 tccgaatttacaaca 30024562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 30843365 - 30843284
Alignment:
Q  32 actttgatattggttactacttcccttt-gctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    |||||||||||||||||||||| ||||| ||||||||| ||  |||||  |||||||||||||||| |||||||||||||||||    
T  30843365 actttgatattggttactactttccttttgctccacacttctaagttt--attggtgtgattttgattctgaattcacaacagt 30843284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 6430441 - 6430496
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6430441 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23564980 - 23564874
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtct 100  Q
    |||||| |||||||| |||||| ||||| | |||||||||||||| |||||||  |||  |||||||||||   |||  |||| ||||||||||||||||    
T  23564980 ctaggttttgttattgttgttgcttgtggttactttgatattggtcactacttttcttcactccacacatctatgtt--tattagtgtgattttgagtct 23564883  T
Q  101 gaattcaca 109  Q
    |||||||||    
T  23564882 gaattcaca 23564874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 4510394 - 4510339
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  4510394 ttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 4512236 - 4512181
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  4512236 ttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 2360827 - 2360774
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaa 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  2360827 ttgctccacacatcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 22270266 - 22270321
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||||| ||||    
T  22270266 ttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcataaca 22270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 30814715 - 30814770
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    ||||||||||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  30814715 ttgctccacacatcatattttgtactggtgtgaaatttgagtccgaattcacaaca 30814770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 36574403 - 36574324
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||||||||||| || || |||||| ||||||||||  ||||  |||||||||||   ||||||||||||||||||||    
T  36574403 actttgatattggttaatattttcctttgatccacacatctaagtt--tattggtgtgagaattgagtctgaattcacaaca 36574324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 2580269 - 2580199
Alignment:
Q  40 attggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||| |||| |||||| ||||||||||||||| | ||||  ||||||||||||||  ||| ||||||||||||    
T  2580269 attgattaccacttccttttgctccacacatctttgtttacattggtgtgatttt--gtccgaattcacaaca 2580199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 24790302 - 24790355
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    ||||||| |||| || ||||||||||||||||| |||| ||||||||| |||||    
T  24790302 tggttaccactttccgttgctccacacatcatactttgcattggtgtgtttttg 24790355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 6359800 - 6359768
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||||||||||||||||| |||||    
T  6359800 ttgctccacacatcatagtttgtattgatgtga 6359768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 43504022 - 43503974
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||| |||  |||||||||||||||||||| || ||||||||||||    
T  43504022 tggttaccactctcctttgctccacacatcatatttcgtattggtgtga 43503974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12743840 - 12743728
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtc 99  Q
    |||||||||||||||||||||| ||||| | ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||    
T  12743840 ctaggtgttgttattattgttgcttgtgtttactttgaaattggttactactttcctttgctccacacaacatagtttgtattggtgtgagttttgagtc 12743741  T
Q  100 tgaattcacaaca 112  Q
     ||||||||||||    
T  12743740 cgaattcacaaca 12743728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 56178534 - 56178438
Alignment:
Q  14 ttattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  56178534 ttattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 5872071 - 5872183
Alignment:
Q  1 ctaggtgttgttattattgt---tgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||   |||||||| |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  5872071 ctaggtgttgttattattgttgttgtttgtgttcactttgatattggttactactttcctttgctccacacatc--agtttgtattggtgtgattttgag 5872168  T
Q  98 tctgaattcacaaca 112  Q
    || | ||||||||||    
T  5872169 tccggattcacaaca 5872183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45687102 - 45686987
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgt-gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||||||||||||   ||| | |  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  45687102 ctaggtgttgttattattgttgttgcttgttgtttgctttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttga 45687003  T
Q  97 gtctgaattcacaaca 112  Q
    ||||||||||||||||    
T  45687002 gtctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36463310 - 36463196
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  36463310 ctaggtgttgttattattgttgttgcttgtgtttactttgatattggttattactttcctttactccacacatcatagtttgtattagtgtgattttgag 36463211  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  36463210 tccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 48893523 - 48893443
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48893523 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 48143301 - 48143417
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48143301 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttga 48143400  T
Q  97 gt-ctgaattcacaaca 112  Q
    || | ||||||||||||    
T  48143401 gtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26175551 - 26175436
Alignment:
Q  1 ctaggtgttgttattattg---ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||||||||||||||||   ||| ||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  26175551 ctaggtgttgttattattgctattgcttgtgtttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttga 26175452  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  26175451 gtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 46147310 - 46147195
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||| |||||||||||||||||   |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  46147310 ctaggtattgttattattgttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgcattggtgtgagttttga 46147211  T
Q  97 gtctgaattcacaaca 112  Q
    | | ||||||||||||    
T  46147210 ggcggaattcacaaca 46147195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47038330 - 47038219
Alignment:
Q  1 ctaggtgttgttattattgtt---gtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| |||||   ||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  47038330 ctaggtgttgttattgttgttattgtttgtgtttactttgatattggttactactttcctttgttccacacatcatagtttgtattggtgtgattttgag 47038231  T
Q  98 tctgaattcaca 109  Q
    ||  ||||||||    
T  47038230 tccaaattcaca 47038219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12739465 - 12739353
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtc 99  Q
    |||||||||||||||||| ||| ||||| | ||||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||    
T  12739465 ctaggtgttgttattattattgcttgtgtttactttgaaattggttactactttcttttactccacacatcatagtttgtattggtgtgagttttgagtc 12739366  T
Q  100 tgaattcacaaca 112  Q
     ||||||||||||    
T  12739365 cgaattcacaaca 12739353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 52082551 - 52082463
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  52082551 ttgtgttcactttgatattggttactactttcctttgttccacacatcataatttgtattggtgtgattttgagtccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 29999715 - 29999644
Alignment:
Q  26 gtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29999715 gtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 29999644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34570329 - 34570214
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  34570329 ctaggtgttgttattgttgattattgtttgtgttcattttgatattggttactactttcctttgctccacacatcatagtttatattggtgtgattttga 34570230  T
Q  97 gtctgaattcacaaca 112  Q
     || |||||| |||||    
T  34570229 atccgaattcgcaaca 34570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 54199796 - 54199706
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    ||||| ||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  54199796 ttgtgttcactttgatactggttactactttcctttgctccatacatcatcgtttgtattggtgtgattttgagtccgaattcacaacagt 54199706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 52095250 - 52095162
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  52095250 ttgtgttcactttgatattgattactactttcctttgttccacacgtcatagtttgtattggtgtgattttgagtccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29254747 - 29254861
Alignment:
Q  1 ctaggtgttgttattattgt---tgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||   |||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||    
T  29254747 ctaggtgttgttattattgtcgttgtttgtgttcactttaatattggttactactttc-tttgctccacacatcatagtttgtattagtgtgattttaag 29254845  T
Q  98 -tctgaattcacaaca 112  Q
     || ||||||||||||    
T  29254846 ttccgaattcacaaca 29254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 5369970 - 5369897
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  5369970 ttgtgttcactttgatattgattactactttcctttactccacacatcatagtttgtattggtgtgattttgag 5369897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 37740911 - 37740996
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaacagt 114  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  37740911 tcactttgatattgattactactttcctgtgctccacacatcatagtttgtattggtgtgagttttgagtccgaatttacaacagt 37740996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 52467238 - 52467159
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 110  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  52467238 actttgatattggttaccactttcctttgcttcacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 9927339 - 9927258
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||    
T  9927339 actttgatattggtaactactttcctttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaaca 9927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 31474400 - 31474512
Alignment:
Q  1 ctaggtgttgttattattgt---tgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||   |||||||| | |||||||||||| ||||||||| | |||||| |||||||||| ||||||||||||||||  |||||    
T  31474400 ctaggtgttgttattgttgttgttgtttgtgtttactttgatattgattactactttcatttgctacacacatcattgtttgtattggtgtga--ttgag 31474497  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  31474498 tccgaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 37229608 - 37229531
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| | |||||||||| ||||||||||    
T  37229608 actttgatattggttactacttcccattgctccacacaacatagttt-tattggttttattttgagtccgaattcacaa 37229531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 4588215 - 4588320
Alignment:
Q  8 ttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga--ttttgagtctgaatt 105  Q
    |||||||| |||||||||||| |  |||||||| ||||||||| || |||||||||||||||||| ||| | |||||||||||  ||||||||| |||||    
T  4588215 ttgttattgttgttgtttgtgattgctttgatagtggttactattttcctttgctccacacatcaaagtat-tattggtgtgagtttttgagtccgaatt 4588313  T
Q  106 cacaaca 112  Q
    |||||||    
T  4588314 cacaaca 4588320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 6542098 - 6541985
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtc 99  Q
    |||||| |||||||| |||||| ||||| | |||||||||||||||| ||||| |||||||||||||||||| ||| | ||||| ||||| ||||  |||    
T  6542098 ctaggttttgttattgttgttgcttgtgattactttgatattggttattactttcctttgctccacacatcaaagtat-tattgatgtgagttttatgtc 6542000  T
Q  100 tgaattcacaacagt 114  Q
     ||||||||||||||    
T  6541999 cgaattcacaacagt 6541985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 13992174 - 13992112
Alignment:
Q  29 ctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgat 91  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  13992174 ctcactttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgat 13992112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 50262542 - 50262487
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  50262542 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 5207730 - 5207651
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||   ||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||    
T  5207730 actttgatatcaattactactttcctttgctccacacaccata-tttatattggtgtgattttgagtctgcattaacaaca 5207651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 41639746 - 41639801
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||    
T  41639746 ttgctccacacatcatagtttgtattgatgtgaaatttgagtctgaattcacaaca 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 24969936 - 24970030
Alignment:
Q  17 ttgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||| ||||| | | |||||||||||||||||||| |||||||| |||||||| | ||||  ||  ||||||||||||||  ||||||||||||    
T  24969936 ttgttggttgtgattattttgatattggttactactttcctttgct-cacacatctttgttttcatcagtgtgattttgagttcgaattcacaaca 24970030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 36994851 - 36994898
Alignment:
Q  66 cacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36994851 cacatcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 48142266 - 48142206
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattt 93  Q
    ||||| |||||||||| ||||| |||||||||||||||||  ||||| ||||||||||||||    
T  48142266 actttaatattggttattactttcctttgctccacacatctaagttt-tattggtgtgattt 48142206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 2210040 - 2210072
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||||||||||||||||||||||||    
T  2210040 ttgctccacacatcatagtttgtattggtgtga 2210072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 31495174 - 31495130
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggt 86  Q
    |||||||||||| |||||||||||||||||||| || ||||||||    
T  31495174 tggttactactttcctttgctccacacatcatatttcgtattggt 31495130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 5280672 - 5280635
Alignment:
Q  34 tttgatattggttactacttccctttgctccacacatc 71  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  5280672 tttgatattggttactacttacctttactccacacatc 5280635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51338327 - 51338392
Alignment:
Q  1 ctaggtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccac 66  Q
    |||||| |||||||| |||||| |||||   |||||||||||| ||||||||| | ||||||||||    
T  51338327 ctaggttttgttattgttgttgcttgtgactactttgatattgattactactttcatttgctccac 51338392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 34496053 - 34496110
Alignment:
Q  55 cctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    ||||||||||||||||| | ||||  ||||||||||||||||  | ||||||||||||||    
T  34496053 cctttgctccacacatctttgttttcattggtgtgattttga--ccgaattcacaacagt 34496110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 37754850 - 37754777
Alignment:
Q  34 tttgatattggttactacttcccttt-gctccacacatcatagtttgtattggtgtgattttgagtctgaattcac 108  Q
    |||||||||||||| || ||| |||| ||||||||||||  |||||  |||||| ||||||||||| |||||||||    
T  37754850 tttgatattggttaataattctcttttgctccacacatctaagttt--attggtttgattttgagtatgaattcac 37754777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22834921 - 22834807
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||| ||||| ||   |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22834921 ctaggtgttgttattgttgttattacctgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 22834822  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||||||||    
T  22834821 tccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 40734777 - 40734865
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  40734777 ttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 40735658 - 40735750
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  | ||||||||||||    
T  40735658 ttgtttgtgttcactttgatattggttactactttcctttgctccacacatcataatttgtattggtgtgattttgataccgaattcacaaca 40735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 44700398 - 44700284
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||||||||||||||||||   |||| | ||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||    
T  44700398 ctaggtgttgttattattgttgttgcttgtgtttactttgatattggttactacttttctttgctccatgcatcatagtttgtattggtgtgattttgag 44700299  T
Q  98 tctgaattcacaaca 112  Q
    || ||||||| ||||    
T  44700298 tccgaattcaaaaca 44700284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 9666349 - 9666270
Alignment:
Q  33 ctttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  9666349 ctttgatattggttactactttcctttgctccacagatcatagtttgtattggtgtgattttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 37408735 - 37408829
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacagt 114  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||| | ||||||||||||||    
T  37408735 ttgtttgtgctcactttaatattggttactactttcctttgctccacacatcatattttgtattgatgtgactttgaggccgaattcacaacagt 37408829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 9581563 - 9581652
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt-ctgaattcacaaca 112  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  9581563 ttgtgctcactttgatattggttactactttcctttgcttcacacatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 9636012 - 9635939
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9636012 ttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag 9635939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23391827 - 23391712
Alignment:
Q  1 ctaggtgttgttattattgttgttt---gtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||||||||||||||||||||||   ||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||     
T  23391827 ctaggtgttgttattattgttgtttcttgtgttcactttgatattggttattactttccttttctccacacatcatagtttgtattggtgtgagttttgt 23391728  T
Q  97 gtctgaattcacaaca 112  Q
    ||  ||||||||||||    
T  23391727 gttcgaattcacaaca 23391712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 29813337 - 29813430
Alignment:
Q  20 ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29813337 ttgtttgtgttcactttgatattagttactacttttctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 29813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 2074980 - 2074882
Alignment:
Q  14 ttattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaacag 113  Q
    ||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  2074980 ttattgttgcttgtggttattttgatattggttactactttcctttgctccacacatcatagttt-tattggtgtgattttgggtccgaattcacaacag 2074882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 31314695 - 31314808
Alignment:
Q  2 taggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt 98  Q
    |||||||||||||||||||||||   |||| | ||||| ||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  31314695 taggtgttgttattattgttgttgcttgtgtttactttaatattagttattactttcctttgctccatacatcatagtttgtattggtgtgattttgagt 31314794  T
Q  99 ctgaattcacaaca 112  Q
    | | ||||||||||    
T  31314795 cggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 761130 - 761211
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  761130 tcactttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtga-tttgagtccgaattcacaaca 761211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29196305 - 29196189
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgt-gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttg 95  Q
    ||||||||||||||||||||||||   ||| | |  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||    
T  29196305 ctaggtgttgttattattgttgttgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagatttg 29196206  T
Q  96 agtctgaattcacaaca 112  Q
    |||| ||||||||||||    
T  29196205 agtccgaattcacaaca 29196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 51399096 - 51399182
Alignment:
Q  26 gtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  51399096 gtgctcactttgatattgttttctactttcctttgctccatacatcatagtttgtattggtatgattttgagtccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7762546 - 7762635
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt-ctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  7762546 ttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtagttttgagtcctgaattgacaaca 7762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 27305597 - 27305519
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  27305597 actttgatattggttactactttcctttgctccacacatcatagtt--tattggtgtgattttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 5236345 - 5236257
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| |||||||||||| | ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5236345 ttgtgttcactttgatatcgattactactttcctgtactccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 45095443 - 45095514
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  45095443 ttgtgctcactttgatattggttactactttcctttgctctacacatcatagtttgtattgatgtgattttg 45095514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 9634709 - 9634620
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacag 113  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||  | |||||||||||||    
T  9634709 ttgtgttcactttgatattggttactactttcctttgctccaca-atcatagtttgtattggtgtgattttgagaccggaattcacaacag 9634620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 19683776 - 19683703
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  19683776 ttgtgttcactttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagtttgag 19683703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39153279 - 39153164
Alignment:
Q  1 ctaggtgttgttattattgttgt---ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    ||||||||||||||||||| ||    ||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  39153279 ctaggtgttgttattattgctgccgcttgtgtttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttga 39153180  T
Q  97 gtctgaattcacaaca 112  Q
    | | |||||| |||||    
T  39153179 gcccgaattctcaaca 39153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7764745 - 7764834
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagt-ctgaattcacaaca 112  Q
    ||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||  |||||||| | ||||||||||||    
T  7764745 ttgtgttcactttgatattggttactactttcctttacttcacacatcatagtttgtattggtgtagttttgagtccggaattcacaaca 7764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 21350918 - 21350810
Alignment:
Q  5 gtgttgttattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaa 103  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |||||||| |  |||  |||||||||| ||||||||| |||    
T  21350918 gtgttgttattgttgttgtttgtgtttactttgatattggttactactttcctttgcttcacacatctttattt-cattggtgtgagttttgagtccgaa 21350820  T
Q  104 ttcacaacag 113  Q
    ||||||||||    
T  21350819 ttcacaacag 21350810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23410246 - 23410131
Alignment:
Q  1 ctaggtgttgt---tattattgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttga 96  Q
    |||||||||||   |||| |||||| ||||| ||||||||||||  |||||||||| |||||| ||||||||||||||||||||||| ||||| |||||     
T  23410246 ctaggtgttgttaatatttttgttgcttgtgttcactttgatatatgttactactttcctttgatccacacatcatagtttgtattgatgtgagttttgt 23410147  T
Q  97 gtctgaattcacaaca 112  Q
    ||| ||||||||||||    
T  23410146 gtccgaattcacaaca 23410131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 37406981 - 37407057
Alignment:
Q  36 tgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |||||| | ||||||||||||    
T  37406981 tgatattggttactactttcctttgctccacacatcatattttgtagtggtgtgactttgaggccgaattcacaaca 37407057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 5258026 - 5257959
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  5258026 tcactttgttattggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 5257959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 16499302 - 16499369
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtc 99  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  16499302 actttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtc 16499369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 29682642 - 29682728
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga--ttttgagtctgaattcacaacagt 114  Q
    ||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||||||||||    
T  29682642 tcactttaattttgattactactttcctttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaacagt 29682728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 29811148 - 29811237
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||| || |||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||  ||||||||||||    
T  29811148 ttgtgttctctttgaaattggttactactttcctttgctccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaaca 29811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 5260206 - 5260138
Alignment:
Q  29 ctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||    
T  5260206 ctcactttgttattggttactactttcctttgctccacacatcatagttcgtattggtttgactttgag 5260138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 32891363 - 32891458
Alignment:
Q  17 ttgttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||| ||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||| ||| ||||||||    
T  32891363 ttgttgcttgtgtttactttaatattggttactactttcctttgctccacacatcatagttt-cattggtgtgagttttgagtccgaagtcacaaca 32891458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 51352020 - 51351941
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||| | ||||| |||||||||||||| ||||||||||||    
T  51352020 actttgatattggttaccactttcctttgctccacacatcgtagtat-tattgatgtgattttgagtccgaattcacaaca 51351941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23200020 - 23199954
Alignment:
Q  29 ctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||    
T  23200020 ctcactttgttattggttactactttcctttgctccacatatcatactttgtattggtgtggttttg 23199954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 23197817 - 23197761
Alignment:
Q  39 tattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||    
T  23197817 tattggttactactttcctttgctccacatatcatactttgtattggtgtggttttg 23197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 47304575 - 47304629
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  47304575 ttgctccacacatcatagtttgtattgttgtgattttaagtccgaattcagaaca 47304629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 801388 - 801436
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||    
T  801388 tggttactactttcctttgctccacacatcatatttcgtattggtgtga 801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 4160105 - 4160059
Alignment:
Q  67 acatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 4160059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 31340071 - 31340018
Alignment:
Q  59 tgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||| ||||||||||||||||| |||||||||  | ||||||||||    
T  31340071 tgctccacacattatagtttgtattggtgtaattttgagtacgcattcacaaca 31340018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 6095446 - 6095414
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||||||||||||||||||||||||    
T  6095446 ttgctccacacatcatagtttgtattggtgtga 6095414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 43403586 - 43403554
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||||||||||||||||||||||||    
T  43403586 ttgctccacacatcatagtttgtattggtgtga 43403554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 34491505 - 34491557
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgt-gattttgagtctgaattcaca 109  Q
    ||||||||||||| |||||||||||||||||  | |||||||| |||||||||    
T  34491505 ttgctccacacattatagtttgtattggtgtaaaatttgagtccgaattcaca 34491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5408985 - 5408869
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5408985 ctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgactttga 5408886  T
Q  97 gtct-gaattcacaaca 112  Q
    | || ||||||||||||    
T  5408885 gactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5413310 - 5413194
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||| |||    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5413310 ctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgactttga 5413211  T
Q  97 gtct-gaattcacaaca 112  Q
    | || ||||||||||||    
T  5413210 gactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 26954171 - 26954091
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26954171 actttgaaattggttactactttcttttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 28137291 - 28137211
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  28137291 actttgatattggttactactttcctttgctccacacgtcatagtttgtattggtgtgattttgagaccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9182946 - 9182857
Alignment:
Q  1 ctaggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggt 86  Q
    ||||||||||||||| |||    ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9182946 ctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggt 9182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3038842 - 3038729
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgt-gctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttga 96  Q
    ||||||||||||||||||||||||   ||| | |  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  3038842 ctaggtgttgttattattgttgttacttgttgtttgctttgatattggttattactttcctttgctcgacacatcatagtttgtattggtctgattttga 3038743  T
Q  97 gtctgaattcacaa 110  Q
    ||  ||||||||||    
T  3038742 gttcgaattcacaa 3038729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 16452210 - 16452127
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag-tctgaattcacaaca 112  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  16452210 tcactttgttattggttactactttcctttactccacacatcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 31404563 - 31404472
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctg-aattcacaacagt 114  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| ||||||||  ||| | |||||||||||||    
T  31404563 ttgtgctcactttgatattgattactattttcctttgctccacacatcatagttcgtattggagtgattttttgtccgaaattcacaacagt 31404472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 5406091 - 5406025
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  5406091 ttgtgctcactttaatattggttactacttttctttactccacacatcatagtttgtattggtgtga 5406025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 5410416 - 5410350
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  5410416 ttgtgctcactttaatattggttactacttttctttactccacacatcatagtttgtattggtgtga 5410350  T

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Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33160265 - 33160169
Alignment:
Q  1 ctaggtgttgttattattgttgtt---tgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgatttt 94  Q
    ||||||||||||| ||||||||||   |||  | ||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  33160265 ctaggtgttgttaatattgttgttgcttgtatttactttgaaattggttactattttcctttgctccacacatcatagtttgtattggtatgatttt 33160169  T

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Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 16569305 - 16569389
Alignment:
Q  30 tcactttgatattggttactacttcccttt-gctccacacatcatagtttg-tattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||   |||||||||||||||||||| ||||||||||||    
T  16569305 tcactttgattttggttactactttccttttgctccacacatcatagttgaatattggtgtgattttgagtccgaattcacaaca 16569389  T

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Target: chr6; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 30834416 - 30834332
Alignment:
Q  30 tcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctg-aattcacaacag 113  Q
    |||||||| |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| | | ||||||||||||    
T  30834416 tcactttgttattggttactattttcctttgctccacacatcatatttcgtattggtgtgattttgagaccgaaattcacaacag 30834332  T

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Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 2171408 - 2171342
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  2171408 cactttgttagtggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 2171342  T

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Target: chr6; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 22963566 - 22963508
Alignment:
Q  55 cctttgctccacacatcatagtttgtattggtgtgattttgagtct-gaattcacaaca 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22963566 ccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

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Target: chr6; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 23824827 - 23824885
Alignment:
Q  55 cctttgctccacacatcatagtttgtattggtgtgattttgagtct-gaattcacaaca 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23824827 ccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

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Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 602958 - 602903
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  602958 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 602903  T

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Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 14521588 - 14521478
Alignment:
Q  6 tgttgttattattgttgtttgtgctcactttgatattggttactacttcc----ctttgctccacacatcatagtttgtattggtgtga-ttttgagtct 100  Q
    |||||||||| |||||| ||||| | ||||||| |||||||||||| | |    |||||||||||||||||||||||  |||||||||| |||||||||     
T  14521588 tgttgttattgttgttgcttgtgtttactttgaaattggttactacgtacttttctttgctccacacatcatagttt-cattggtgtgagttttgagtcc 14521490  T
Q  101 gaattcacaaca 112  Q
    ||||||||||||    
T  14521489 gaattcacaaca 14521478  T

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Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 3072638 - 3072579
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||| || |||||||||||| |||||||||||||||||||| || ||||||||||||    
T  3072638 cactttgttagtggttactactttcctttgctccacacatcatatttcgtattggtgtga 3072579  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 412387 - 412434
Alignment:
Q  42 tggttactacttccctttgctccacacatcatagtttgtattggtgtg 89  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||    
T  412387 tggttactactttcctttgctccacacatcatacttggtattggtgtg 412434  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 257308 - 257245
Alignment:
Q  48 ctacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    |||||| |||||||||||||||| ||| ||  |||||||||||||||||||  ||||||||||||    
T  257308 ctactttcctttgctccacacattataatta-tattggtgtgattttgagttcgaattcacaaca 257245  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 17758346 - 17758378
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||||||||||||||||||||||||    
T  17758346 ttgctccacacatcatagtttgtattggtgtga 17758378  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 5043951 - 5043982
Alignment:
Q  59 tgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||||||||||||||||||||||    
T  5043951 tgctccacacatcatagtttgtattggtgtga 5043982  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 3808550 - 3808518
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||| ||||||||||||||||||||||    
T  3808550 ttgctccacatatcatagtttgtattggtgtga 3808518  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 17763313 - 17763345
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||||||||||| |||||||||||    
T  17763313 ttgctccacacatcatagtttatattggtgtga 17763345  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 21589252 - 21589284
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||||||||||||||||||| |||||||||||    
T  21589252 ttgctccacacatcatagtttatattggtgtga 21589284  T

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Target: scaffold0006 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 148992 - 148914
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaa 110  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  148992 actttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtccgaattcacaa 148914  T

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Target: scaffold0016 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 114857 - 114955
Alignment:
Q  2 taggtgttgttattattg----ttgtttgtgctcactttgatattggttactacttccctttgctccacacatcatag-tttgtattggtgtgattttg 95  Q
    |||||||||||||| |||    ||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  114857 taggtgttgttattgttgattattgattgtgttcactttgatattggttattactttcctttgctccacacatcatagttttgtattggtgtgattttg 114955  T

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Target: scaffold0066 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 20303 - 20216
Alignment:
Q  24 ttgtgctcactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 112  Q
    ||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||    
T  20303 ttgtgttcactttgacattggttactaccttcctttgctccacacatcatagtttgtattggtatga-gttgagtccgaattcacaaca 20216  T

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Target: scaffold0286 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 11853 - 11919
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  11853 cactttgttagtggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 11919  T

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Target: scaffold0002 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 434821 - 434887
Alignment:
Q  31 cactttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  434821 cactttaataatggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 434887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 1382 - 1301
Alignment:
Q  32 actttgatattggttactacttccctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaaca 112  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||  ||||||||||||    
T  1382 actttaatattgattactactttcctttgctccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaaca 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 11031 - 10976
Alignment:
Q  40 attggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||    
T  11031 attggttactactttcctttgctccacatatcatactttgtattggtgtggttttg 10976  T

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Target: scaffold0491; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 8605 - 8550
Alignment:
Q  40 attggttactacttccctttgctccacacatcatagtttgtattggtgtgattttg 95  Q
    |||||||||||||| ||||||||||||  |||||| |||||||||||||| |||||    
T  8605 attggttactactttcctttgctccacgtatcatactttgtattggtgtggttttg 8550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 1212 - 1269
Alignment:
Q  40 attggttactacttccctttgctccacacatcatagtttgtattggtgtgattttgag 97  Q
    |||||||||||||  |||||| |||||||||||||||| |||||||||||| ||||||    
T  1212 attggttactactatcctttgttccacacatcatagttcgtattggtgtgactttgag 1269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 7646 - 7678
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    |||||||||||||||||||||||||||||||||    
T  7646 ttgctccacacatcatagtttgtattggtgtga 7678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 17849 - 17817
Alignment:
Q  58 ttgctccacacatcatagtttgtattggtgtga 90  Q
    ||||| |||||||||||||||||||||||||||    
T  17849 ttgctacacacatcatagtttgtattggtgtga 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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