View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_high_5 (Length: 566)

Name: NF19141_high_5
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_high_5
NF19141_high_5
[»] chr6 (4 HSPs)
chr6 (119-545)||(2188259-2188689)
chr6 (20-123)||(2188731-2188831)
chr6 (447-541)||(2170263-2170357)
chr6 (75-123)||(13587626-13587674)
[»] scaffold0286 (1 HSPs)
scaffold0286 (447-541)||(12904-12998)
[»] chr8 (3 HSPs)
chr8 (73-115)||(6863082-6863124)
chr8 (74-112)||(4472298-4472336)
chr8 (70-108)||(10310487-10310525)
[»] chr7 (3 HSPs)
chr7 (71-111)||(31718945-31718985)
chr7 (72-110)||(47872988-47873026)
chr7 (72-112)||(8235026-8235066)
[»] chr5 (2 HSPs)
chr5 (476-527)||(16694585-16694636)
chr5 (73-115)||(2818990-2819032)
[»] chr4 (2 HSPs)
chr4 (73-112)||(43006714-43006753)
chr4 (74-111)||(6122148-6122185)
[»] chr3 (1 HSPs)
chr3 (370-420)||(41244837-41244886)
[»] chr1 (2 HSPs)
chr1 (73-115)||(7890421-7890463)
chr1 (74-115)||(7354187-7354228)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 119 - 545
Target Start/End: Complemental strand, 2188689 - 2188259
Alignment:
Q  119 tagaattggcttatttcacatacttgaaaaaagtttatcaaaacacaaaagatggttgacggtgatttaattagtgttgcaaa----gaaaaacaaacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||    
T  2188689 tagaattggcttatttcacatacttgaaaaaagtttatcaaaacacaaaagatggttgacggtgacttaattagtgttgcaaacaaggaaaaacaaacat 2188590  T
Q  215 gaacttaattttgagacacaattattttgatttcacttgttattgaaaaccaataccgatgaaattattgtctcagatgttacaacaacaaaaaccatga 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188589 gaacttaattttgagacacaattattttgttttcacttgttattgaaaaccaataccgatgaaattattgtctcagatgttacaacaacaaaaaccatga 2188490  T
Q  315 actctaaatctgagggccaaagttgatgacaacctccaaaaggctcaatgacaacataattactagaagtaaaagctaagagactctaaatgaagatgga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188489 actctaaatctgagggccaaagttgatgacaacctccaaaaggctcaatgacaacataattactagaagtaaaagctaagagactctaaatgaagatgga 2188390  T
Q  415 agaaaatatttctactttgttgggtttgaaactttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaact 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188389 agaaaatatttctactttgttgggtttgaaactttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaact 2188290  T
Q  515 ccactttctataaacaattcttcctctctgc 545  Q
    |||||||||||||||||||||||||||||||    
T  2188289 ccactttctataaacaattcttcctctctgc 2188259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 2188831 - 2188731
Alignment:
Q  20 gatcttacttcatggacaaatgnnnnnnncaaaattgaattaaaaaatcatatcatcatatttcatttaatttaattgtaagatttattgatccaaaggt 119  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  2188831 gatcttacttcatggacaaatgttttttccaaaattgaattaaaaaatcatatcat---atttcatttaatttaattgtaagatttattgatccaaaggt 2188735  T
Q  120 agaa 123  Q
    ||||    
T  2188734 agaa 2188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 2170263 - 2170357
Alignment:
Q  447 tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctct 541  Q
    ||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  2170263 tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctct 2170357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 13587674 - 13587626
Alignment:
Q  75 tcatatttcatttaatttaattgtaagatttattgatccaaaggtagaa 123  Q
    |||||||||||| |||||||| || |||||||||||||||| |||||||    
T  13587674 tcatatttcattcaatttaatagtgagatttattgatccaatggtagaa 13587626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 541
Target Start/End: Complemental strand, 12998 - 12904
Alignment:
Q  447 tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctct 541  Q
    ||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  12998 tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctct 12904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 6863124 - 6863082
Alignment:
Q  73 catcatatttcatttaatttaattgtaagatttattgatccaa 115  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  6863124 catcatatttcatttaatttaatggtgagatttattgatccaa 6863082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 4472298 - 4472336
Alignment:
Q  74 atcatatttcatttaatttaattgtaagatttattgatc 112  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  4472298 atcatatctcatttaatttaaatgtaagatttattgatc 4472336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 10310487 - 10310525
Alignment:
Q  70 tatcatcatatttcatttaatttaattgtaagatttatt 108  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  10310487 tatcatcatatttcatttaatttaattgtagaatttatt 10310525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 31718945 - 31718985
Alignment:
Q  71 atcatcatatttcatttaatttaattgtaagatttattgat 111  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  31718945 atcatcatatttcatttgatttaatggtaagatttattgat 31718985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 47873026 - 47872988
Alignment:
Q  72 tcatcatatttcatttaatttaattgtaagatttattga 110  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  47873026 tcatcatatttcatttaatttaatagtaaaatttattga 47872988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 8235066 - 8235026
Alignment:
Q  72 tcatcatatttcatttaatttaattgtaagatttattgatc 112  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  8235066 tcatcatatttcatttaattaaatagtgagatttattgatc 8235026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 527
Target Start/End: Complemental strand, 16694636 - 16694585
Alignment:
Q  476 atatcctccatactagttttcagcttgaatacgtgaactccactttctataa 527  Q
    ||||||||||| ||| ||||| ||||||||| ||||| ||||||||||||||    
T  16694636 atatcctccatgctacttttctgcttgaataagtgaattccactttctataa 16694585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 2819032 - 2818990
Alignment:
Q  73 catcatatttcatttaatttaattgtaagatttattgatccaa 115  Q
    |||||||||||||||||| |||| || ||||||||||||||||    
T  2819032 catcatatttcatttaatctaatggtgagatttattgatccaa 2818990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 43006753 - 43006714
Alignment:
Q  73 catcatatttcatttaatttaattgtaagatttattgatc 112  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  43006753 catcatatttcatttgatctaattgtaagatttattgatc 43006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 6122185 - 6122148
Alignment:
Q  74 atcatatttcatttaatttaattgtaagatttattgat 111  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  6122185 atcatatttcatttaatttaatggtaaaatttattgat 6122148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 41244886 - 41244837
Alignment:
Q  370 ataattactagaagtaaaagctaagagactctaaatgaagatggaagaaaa 420  Q
    ||||||||||||||||||  ||||||||||| ||||||| |||||||||||    
T  41244886 ataattactagaagtaaac-ctaagagactccaaatgaatatggaagaaaa 41244837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 7890463 - 7890421
Alignment:
Q  73 catcatatttcatttaatttaattgtaagatttattgatccaa 115  Q
    ||||||||||||||||||||||| || | ||||||||||||||    
T  7890463 catcatatttcatttaatttaatggtgaaatttattgatccaa 7890421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 7354187 - 7354228
Alignment:
Q  74 atcatatttcatttaatttaattgtaagatttattgatccaa 115  Q
    ||||||| |||||| ||||||| |||||||||||||||||||    
T  7354187 atcatatctcatttgatttaatggtaagatttattgatccaa 7354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University