View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_high_6 (Length: 458)

Name: NF19141_high_6
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_high_6
NF19141_high_6
[»] chr1 (6 HSPs)
chr1 (1-442)||(16442067-16442508)
chr1 (1-442)||(16425782-16426230)
chr1 (19-350)||(16439045-16439376)
chr1 (1-341)||(16414487-16414827)
chr1 (9-358)||(16418939-16419288)
chr1 (199-260)||(33768470-33768531)
[»] chr8 (9 HSPs)
chr8 (114-257)||(2050742-2050885)
chr8 (48-267)||(10768409-10768628)
chr8 (159-257)||(2055196-2055294)
chr8 (206-257)||(2029543-2029594)
chr8 (213-258)||(2022974-2023019)
chr8 (159-256)||(2034055-2034152)
chr8 (216-257)||(2046915-2046956)
chr8 (214-257)||(1948561-1948604)
chr8 (201-257)||(2058062-2058118)
[»] chr2 (1 HSPs)
chr2 (209-320)||(28742371-28742482)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 16442508 - 16442067
Alignment:
Q  1 tttataggaacatactgctggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442508 tttataggaacatactgctggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaaccta 16442409  T
Q  101 tttaatagacattggttgtgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgcc 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  16442408 tttaatagatattggttgtgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaattaactttaggaacagtaaaacacgtc 16442309  T
Q  201 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16442308 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctactataccagaggctt 16442209  T
Q  301 tggtggttaacattggtgattttttacaggcatgtttttgtctttctttttcaacaaatattggcaatttattcttattgcagcattttctgttcatttt 400  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  16442208 tggtggttaacatcggtgattttttgcaggcatgtttttgtctttctttttctacaaatattggccatttattcttattgcagcattttctgttcatttt 16442109  T
Q  401 caagaatcaaatcttttacaacgctgcagagccttagatctg 442  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16442108 caagaatcaaatcttttacaacgctgcagagccttagatctg 16442067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 16426230 - 16425782
Alignment:
Q  1 tttataggaacatactgctggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16426230 tttataggaacatactgctggaatacttgaaccatgtaatgaaagtgggtactttagtgtttgagttactatcagaagctcttggtctaaacccaaccta 16426131  T
Q  101 tttaatagacattggttgtgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgcc 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  16426130 tttaatagatattggttgtgctgagggcttatctgcttttggccactattatccatcatgtcctgaaccagaattaactataggaacagtaaaacacgcc 16426031  T
Q  201 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16426030 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctactataccagaggctt 16425931  T
Q  301 tggtggttaacattggtgattttttacaggcatgtttttgtc-------tttctttttcaacaaatattggcaatttattcttattgcagcattttctgt 393  Q
    ||||||||||||| ||||||||||| ||||||||||||||||       ||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  16425930 tggtggttaacatcggtgattttttgcaggcatgtttttgtcttttttttttttttttctacaaatattggccatttattcttattgcagcattttctgt 16425831  T
Q  394 tcattttcaagaatcaaatcttttacaacgctgcagagccttagatctg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16425830 tcattttcaagaatcaaatcttttacaacgctgcagagccttagatctg 16425782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 16439045 - 16439376
Alignment:
Q  19 tggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttg 118  Q
    |||||||||||||||| ||||||||| | |||||  ||||| | ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  16439045 tggaatacttgaaccaagtaatgaaactagggacaatattgctcgagttactatcagaagctcttggtctaaatccaagctatttaatagatattggttg 16439144  T
Q  119 tgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcaca 218  Q
    | | ||| || |||||||||| ||||| || ||||   |||| |||||||| ||  ||||||| |||||  ||||||| || ||| |||||||||||||     
T  16439145 tacggagagcctatctgctttcggccattactatctggcctgccctgaacccgagttaactttgggaaccataaaacatgcagatgttgatttcatcacg 16439244  T
Q  219 gtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctttggtggttaacattggtg 318  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||| |||  |||||| | || ||||| || ||||    
T  16439245 gtgcttctacaagatcatacaggtggtctccaagttcttcataaagatatgtggattgatgtacctcctctacatgaggctcttgttgttaatatcggtg 16439344  T
Q  319 attttttacaggcatgtttttgtctttctttt 350  Q
    |||| || ||||||||||||| ||||| ||||    
T  16439345 atttattgcaggcatgtttttatctttttttt 16439376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 16414827 - 16414487
Alignment:
Q  1 tttataggaacatactgctggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaaccta 100  Q
    |||||||| ||||||| || |||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||  |||||||    
T  16414827 tttatagggacatactacttgaatacttgagccaagtaaagaaagtgggaactttactgtttgagttactatcagaagctcttggtctgaattcaaccta 16414728  T
Q  101 tttaatagacattggttgtgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgcc 200  Q
    ||||| |||||||||||||||||||||||| | |||||||||||| || |||||| ||||||||||||| ||| |||||||||||||   |||||| |      
T  16414727 tttaacagacattggttgtgctgagggcttttatgcttttggccattactatccaccctgtcctgaaccggaattaactttaggaacctcaaaacatgtt 16414628  T
Q  201 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctt 300  Q
    ||  | | |||| | ||| ||||||||||||||||| |||||||||| |||  |||||| | ||| |||||| |||||||||||||||| || ||||||     
T  16414627 gacgtggttttccttacactgcttctacaagatcatgtaggtggccttcaatatcttcacagggacatgtggattgatgtacctcctatgcctgaggctc 16414528  T
Q  301 tggtggttaacattggtgattttttacaggcatgtttttgt 341  Q
    |  | ||||| ||||| |||||| | |||||||||||||||    
T  16414527 taatcgttaatattggcgattttctgcaggcatgtttttgt 16414487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 16419288 - 16418939
Alignment:
Q  9 aacatactgctggaatacttgaaccatgtaatgaaagtggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatag 108  Q
    ||||||||| |||||||| ||||||| ||||||||| |||||||  ||||| | ||||||||||| |||||| |||||||||| |||| |||||||||||    
T  16419288 aacatactggtggaatacatgaaccaagtaatgaaactggggacaatattgctcgagttactatctgaagcttttggtctaaatccaagctatttaatag 16419189  T
Q  109 acattggttgtgctgagggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattga 208  Q
    | ||||||||| | ||| || |||||||||| |  || || |||||| ||||| ||||  ||||| ||||||| |||||  |||| || || ||| |  |    
T  16419188 atattggttgttccgagcgcctatctgctttcgcgcattactatccagcctgttctgagacagaattaactttgggaaccataaagcatgctgatgtaaa 16419089  T
Q  209 tttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctttggtggtt 308  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| || | | |||| |  | |||    
T  16419088 tttcatcagtgtgcttctacaagatcatataggtggcctccaggttcttcataaggacatgtggattgatgtacctcctctatccgcggctctaattgtt 16418989  T
Q  309 aacattggtgattttttacaggcatgtttttgtctttctttttcaacaaa 358  Q
    |||||||||||  || | |||||||||||| ||||||| ||||| |||||    
T  16418988 aacattggtgaccttctgcaggcatgttttggtctttcgttttctacaaa 16418939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 33768531 - 33768470
Alignment:
Q  199 ccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcat 260  Q
    |||||||||||||||| ||| | ||||||||||| || || ||||| || ||||||||||||    
T  33768531 ccgatattgatttcatgacaattcttctacaagaccagatcggtggtcttcaagttcttcat 33768470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 2050742 - 2050885
Alignment:
Q  114 ggttgtgctga-gggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttc 212  Q
    ||||||||||| ||||| || |||| || |||| ||||||||  | ||||||||||||||| | ||| | ||||||  ||| ||  | |||| |||||||    
T  2050742 ggttgtgctgaagggctaat-tgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttc 2050840  T
Q  213 atcacagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
     ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2050841 ctcacagtgcttcttcaagaccatattggtggcctccaagttctt 2050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 267
Target Start/End: Original strand, 10768409 - 10768628
Alignment:
Q  48 gggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggccact 147  Q
    |||||||||||||||||  ||   ||||||||| | ||||| || |||| | || ||| ||| |||| ||||||||| || |||  |||| | || || |    
T  10768409 gggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccatctaaaagatattgattgtgctgaaggattacttgctctcggtcatt 10768508  T
Q  148 attatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcct 247  Q
    |||||||  | ||||||||||||||| | ||| | ||||||   || ||  | |||| ||||||| |||| |||||||| ||||| ||||| ||||||||    
T  10768509 attatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtggcct 10768608  T
Q  248 ccaagttcttcataaggata 267  Q
    |||||||||| || ||||||    
T  10768609 ccaagttctttatcaggata 10768628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 2055196 - 2055294
Alignment:
Q  159 tgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
    ||||||||||||||| | ||| | ||||||  ||| ||  | |||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2055196 tgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctt 2055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 2029543 - 2029594
Alignment:
Q  206 tgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
    ||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2029543 tgatttcctcacagtgcttctccaagaccatattggtggcctccaagttctt 2029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 2022974 - 2023019
Alignment:
Q  213 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 258  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  2022974 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 2023019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 2034055 - 2034152
Alignment:
Q  159 tgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttct 256  Q
    ||||||||||||||| | ||| ||||||||  ||| ||  | |||| ||||||| ||||||||||||||||||| ||| | ||||| || ||||||||    
T  2034055 tgtcctgaaccagaattgactgtaggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatgttggtggtcttcaagttct 2034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 2046915 - 2046956
Alignment:
Q  216 acagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  2046915 acagtgcttctacaagaccatataggtggtctccaagttctt 2046956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 1948604 - 1948561
Alignment:
Q  214 tcacagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||    
T  1948604 tcacagtgcttctacaagaccatattggtggtctccaagttctt 1948561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 2058062 - 2058118
Alignment:
Q  201 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 257  Q
    |||| ||||||| | ||| ||||||||||||| ||||| ||||| ||||||||||||    
T  2058062 gataatgatttcctgacaatgcttctacaagaccatattggtggtctccaagttctt 2058118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 28742482 - 28742371
Alignment:
Q  209 tttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataaggatatgtgggttgatgtacctcctataccagaggctttggtggtt 308  Q
    |||| ||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||  | |||| |||||||||| || ||||| |||||| | ||  ||    
T  28742482 tttcctcacagtgcttcttcaagaccatattggtggccttcaagttcttcacaagggaaagtggattgatgtaccaccaatacctgaggctcttgttatt 28742383  T
Q  309 aacattggtgat 320  Q
    || |||||||||    
T  28742382 aatattggtgat 28742371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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