View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_low_10 (Length: 431)

Name: NF19141_low_10
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_low_10
NF19141_low_10
[»] scaffold0340 (2 HSPs)
scaffold0340 (288-423)||(9345-9480)
scaffold0340 (292-421)||(9964-10093)
[»] chr8 (6 HSPs)
chr8 (292-423)||(26812091-26812222)
chr8 (292-421)||(26811478-26811607)
chr8 (331-379)||(42663177-42663225)
chr8 (331-389)||(9929842-9929900)
chr8 (292-358)||(26847097-26847165)
chr8 (291-331)||(36403034-36403074)
[»] chr1 (3 HSPs)
chr1 (290-423)||(35014928-35015061)
chr1 (292-421)||(35015545-35015674)
chr1 (292-423)||(34025982-34026113)
[»] chr2 (1 HSPs)
chr2 (19-145)||(10594713-10594839)
[»] chr3 (2 HSPs)
chr3 (331-380)||(27982370-27982419)
chr3 (286-331)||(53343865-53343910)
[»] chr4 (3 HSPs)
chr4 (288-331)||(21837385-21837428)
chr4 (296-370)||(20143928-20144002)
chr4 (291-331)||(42792774-42792814)
[»] chr5 (5 HSPs)
chr5 (290-358)||(23257317-23257387)
chr5 (331-379)||(15561980-15562028)
chr5 (291-358)||(23253465-23253535)
chr5 (292-358)||(24565573-24565641)
chr5 (292-358)||(24606609-24606677)
[»] chr7 (3 HSPs)
chr7 (331-375)||(42880457-42880501)
chr7 (331-389)||(37782829-37782887)
chr7 (286-331)||(767130-767175)


Alignment Details
Target: scaffold0340 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 288 - 423
Target Start/End: Original strand, 9345 - 9480
Alignment:
Q  288 ttatggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcac 387  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9345 ttatggtggattctagagtgaaggtccaaccaagtccctcaccgtgaaccatgaacaaaaactattagattatgttgtcctaccagatcttacaatgcac 9444  T
Q  388 ccctcatacataataattatttctttctttcttctc 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  9445 ccctcatacataataattatttctttctttcttctc 9480  T

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Target: scaffold0340; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 10093 - 9964
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcacccct 391  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||  || || ||||    
T  10093 ggtggattctagggtgagggtccaaccaagtccctcaccgtgaaccatgaaagaaaaccattcgattatgttgtcataccagatcttatgatacatccct 9994  T
Q  392 catacataataattatttctttctttcttc 421  Q
    |||||||||||||| |||||||||||||||    
T  9993 catacataataattgtttctttctttcttc 9964  T

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Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 292 - 423
Target Start/End: Complemental strand, 26812222 - 26812091
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcacccct 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26812222 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatggacccct 26812123  T
Q  392 catacataataattatttctttctttcttctc 423  Q
    ||||||||||||||||||||||||||||||||    
T  26812122 catacataataattatttctttctttcttctc 26812091  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 26811478 - 26811607
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcacccct 391  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||| || || ||||    
T  26811478 ggtggattctagggtgaggatccaaccaagtccctcaccgtgaaccatgaaagaaaaccattcgattatgttgtcataccagatcttacgatacatccct 26811577  T
Q  392 catacataataattatttctttctttcttc 421  Q
    |||||||||||||| ||| |||||||||||    
T  26811578 catacataataattgtttatttctttcttc 26811607  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 42663177 - 42663225
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatctta 379  Q
    |||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  42663177 gtgaaccacgaataaaaaccattaaattatgttgtactaccagatctta 42663225  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 9929900 - 9929842
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcaccc 389  Q
    |||||||||||| |||||||||  |||||| || |||||||||||||||| ||| ||||    
T  9929900 gtgaaccatgaataaaaaccatcggattatcttttcctaccagatcttacgatgtaccc 9929842  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 26847097 - 26847165
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcacc-gtgaacca-tgaacaaaaaccattagatt 358  Q
    |||||||||||| ||||||||||||  |||||||||||| ||||||||  ||| ||| |||||||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacggaaaaaataccattagatt 26847165  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 36403074 - 36403034
Alignment:
Q  291 tggtggattctagagtgagggtccaaccaagtccctcaccg 331  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  36403074 tggtggattctagagtgagggtccaattaggtccctcaccg 36403034  T

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Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 290 - 423
Target Start/End: Original strand, 35014928 - 35015061
Alignment:
Q  290 atggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcaccc 389  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35014928 atggtggattctagagtgagggtccaaccaaatccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcaccc 35015027  T
Q  390 ctcatacataataattatttctttctttcttctc 423  Q
    ||||||||| ||||||||||||||||||||||||    
T  35015028 ctcatacatgataattatttctttctttcttctc 35015061  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 35015674 - 35015545
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcacccct 391  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||| || || ||||    
T  35015674 ggtggattctagggtgagggtccaaccaagtccctcaccgtgaaccatgaaagaaaaccattcgattatgttgtcataccagatcttacgatacatccct 35015575  T
Q  392 catacataataattatttctttctttcttc 421  Q
    ||||||| |||||| |||||||||||||||    
T  35015574 catacattataattgtttctttctttcttc 35015545  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 292 - 423
Target Start/End: Original strand, 34025982 - 34026113
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcacccct 391  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||||||| | ||    
T  34025982 ggtgaattttagagtgagggtccaatcaagtccctcaccgtgaaccatgaaaaaaagccattagattatgttgtcctaccttatcttacaatgcatctct 34026081  T
Q  392 catacataataattatttctttctttcttctc 423  Q
    |||||||||||||| |||| ||||||||||||    
T  34026082 catacataataattgtttccttctttcttctc 34026113  T

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Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 10594713 - 10594839
Alignment:
Q  19 gtgggtaggtgtctttgggttggcgacggtgggtggtggtgggttgtctcattttggagtgagtgatgaatttgaaaatgaaaatgaagaggtttccctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10594713 gtgggtaggtgtctttgggttggcgacggtgggtggtggtgggttgtctcattttggagtgagtgatgaatttgaaaatgaaaatgaagaggtttccctc 10594812  T
Q  119 tccttgttgttgaatgcaacgggtatg 145  Q
    | |||||||||||||||||||||||||    
T  10594813 ttcttgttgttgaatgcaacgggtatg 10594839  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 27982370 - 27982419
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttac 380  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  27982370 gtgaaccatgaataaaaaccatcggattatgttgtcctaccagatcttac 27982419  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 53343910 - 53343865
Alignment:
Q  286 ttttatggtggattctagagtgagggtccaaccaagtccctcaccg 331  Q
    |||| ||||||||||||| |||||||| ||| ||||||||||||||    
T  53343910 ttttttggtggattctagggtgagggttcaaacaagtccctcaccg 53343865  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 21837385 - 21837428
Alignment:
Q  288 ttatggtggattctagagtgagggtccaaccaagtccctcaccg 331  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  21837385 ttatggtggattctagggtgagggtccaactaagtccctcaccg 21837428  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 20144002 - 20143928
Alignment:
Q  296 gattctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaaccattagattatgttgtcctac 370  Q
    |||| ||| |||||||  |||| ||||||||||| |||||||||||| |||  ||| ||||||||||||||||||    
T  20144002 gattttagggtgagggctcaactaagtccctcactgtgaaccatgaaaaaatgccactagattatgttgtcctac 20143928  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 42792774 - 42792814
Alignment:
Q  291 tggtggattctagagtgagggtccaaccaagtccctcaccg 331  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  42792774 tggtggattctagggtgagggtccaattaagtccctcaccg 42792814  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 23257317 - 23257387
Alignment:
Q  290 atggtggattctagagtgagggtccaaccaagtccctcacc-gtgaaccatg-aacaaaaaccattagatt 358  Q
    |||||||||||||||||||||||||||  |||||||||||| || ||||| | || |||||||||||||||    
T  23257317 atggtggattctagagtgagggtccaattaagtccctcaccggtaaaccacgtaaaaaaaaccattagatt 23257387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 15562028 - 15561980
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatctta 379  Q
    |||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  15562028 gtgaaccatgaataaaaacaattagattatgtcgtcctaccaaatctta 15561980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 23253535 - 23253465
Alignment:
Q  291 tggtggattctagagtgagggtccaaccaagtccctcacc-gtgaacca--tgaacaaaaaccattagatt 358  Q
    ||||||||||||| ||||||||||||  |||||||||||| ||||||||  | || |||||||||||||||    
T  23253535 tggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacgtaaaaaaaaaccattagatt 23253465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 24565573 - 24565641
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcacc-gtgaaccatgaacaaaa-accattagatt 358  Q
    |||||||||||| |||||||| |||  || ||||||||| ||| ||||||||||||| |||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatt 24565641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 24606609 - 24606677
Alignment:
Q  292 ggtggattctagagtgagggtccaaccaagtccctcacc-gtgaaccatgaacaaaa-accattagatt 358  Q
    |||||||||||| |||||||| |||  || ||||||||| ||| ||||||||||||| |||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatt 24606677  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 42880501 - 42880457
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagat 375  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||    
T  42880501 gtgaaccatgaataaaaatcattagattatgttgtcctatcagat 42880457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 37782829 - 37782887
Alignment:
Q  331 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatcttacaatgcaccc 389  Q
    |||||||||||| |||||||||  |||||| || |||||||||||||||| ||| ||||    
T  37782829 gtgaaccatgaataaaaaccatcggattatcttttcctaccagatcttacgatgtaccc 37782887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 767130 - 767175
Alignment:
Q  286 ttttatggtggattctagagtgagggtccaaccaagtccctcaccg 331  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||||    
T  767130 ttttacggtggattctagggtgagggtccaattaagtccctcaccg 767175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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