View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_low_11 (Length: 419)

Name: NF19141_low_11

Description: NF19141

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19141_low_11

[»] chr6 (3 HSPs)

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 3)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 130; E-Value: 3e-67

Query Start/End: Original strand, 18 - 155

Target Start/End: Original strand, 2244984 - 2245121

Alignment:

Q	18	tcttatgcataatttatttcttgaatgcaatttgcacctataaccatagtagaatgcaatctgcccacatatgtacaagtcttagaattcaattactatg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2244984	tcttatgcataatttatttcttgaatgcaatttgcacctataaccatagtggaatgcaatctgcccacatatgtacaagtcttagaattcaattactatg	2245083	T

Q	118	tacaagttaggcatttggtcctccctagtaccaaaaga	155	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2245084	tacaagttaggcatttggtcctctctagtaccaaaaga	2245121	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 84 - 124

Target Start/End: Complemental strand, 2125537 - 2125497

Alignment:

Q	84	acatatgtacaagtcttagaattcaattactatgtacaagt	124	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2125537	acatatgtacaagtcttagaattcaattactatgtacaagt	2125497	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3

Raw Score: 29; E-Value: 0.0000006

Query Start/End: Original strand, 275 - 351

Target Start/End: Complemental strand, 2125342 - 2125267

Alignment:

Q	275	accacaatttcgtaaacatgtgcatagacttgtgtattattaaaatattacatatcaaagacatagaaatggaaatt	351	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	2125342	accacaatttag-aaacatgaacatagtcttatgtgttattaaaatgttacatattaaagacatgtaaatggaaatt	2125267	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]