View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_low_13 (Length: 409)

Name: NF19141_low_13
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_low_13
NF19141_low_13
[»] chr2 (2 HSPs)
chr2 (52-393)||(6049580-6049933)
chr2 (88-181)||(26661215-26661308)
[»] chr1 (4 HSPs)
chr1 (61-393)||(44305806-44306150)
chr1 (214-275)||(22893647-22893708)
chr1 (101-181)||(29845336-29845416)
chr1 (88-163)||(22893499-22893574)
[»] chr4 (1 HSPs)
chr4 (61-362)||(13893814-13894127)
[»] chr7 (3 HSPs)
chr7 (61-181)||(13331864-13331984)
chr7 (61-181)||(13342779-13342899)
chr7 (230-323)||(13331699-13331792)
[»] chr5 (1 HSPs)
chr5 (61-181)||(5672335-5672455)
[»] chr6 (3 HSPs)
chr6 (88-181)||(21481133-21481226)
chr6 (88-182)||(19700882-19700976)
chr6 (214-275)||(19701029-19701090)
[»] chr8 (4 HSPs)
chr8 (88-182)||(32718157-32718251)
chr8 (88-182)||(10637343-10637437)
chr8 (214-272)||(10637492-10637550)
chr8 (214-275)||(32718041-32718102)
[»] scaffold0586 (2 HSPs)
scaffold0586 (94-182)||(9319-9407)
scaffold0586 (214-275)||(9462-9523)
[»] chr3 (3 HSPs)
chr3 (94-181)||(15762307-15762394)
chr3 (11-47)||(33117840-33117876)
chr3 (61-97)||(41416251-41416287)
[»] scaffold0500 (1 HSPs)
scaffold0500 (88-138)||(358-408)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 52 - 393
Target Start/End: Original strand, 6049580 - 6049933
Alignment:
Q  52 ccctatggatgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaat 151  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  6049580 ccctaagggtgtgtttgtttcatggaataaaaatgtattcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaat 6049679  T
Q  152 atgcctaggaatacatttttcccaggaaagcagctcc------------cccacgttccacatattttttctctcttttattcccatctgatagcttggg 239  Q
    |||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6049680 atgcctaggaatacatttttcccaggaaagcagctcccccacgttctcccccacgtcccacatattttttctctcttttattcccatctgatagcttggg 6049779  T
Q  240 aaacttttattcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccg 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049780 aaacttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccg 6049879  T
Q  340 ctaaacattccaccttccctgatcttctataataacccatcatctttgtggtgt 393  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6049880 ctaaacattccaccttccctgatcttctataaaaacccatcatctttgtggtgt 6049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 26661215 - 26661308
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  26661215 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 26661308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 44305806 - 44306150
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44305806 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaag 44305905  T
Q  161 aatacatttttcccaggaaagcagctcccccacgttc------------cacatattttttctctcttttattcccatctgatagcttgggaaactttta 248  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305906 aatacatttttcccaggaaagcagctcccccacgttctcccccacattccacatattttttctctcttttattcccatctgatagcttgggaaactttta 44306005  T
Q  249 ttcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 348  Q
     ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306006 gtcctaggaaatataaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 44306105  T
Q  349 ccaccttccctgatcttctataataacccatcatctttgtggtgt 393  Q
    ||||||||  | ||||||||||| |||||||||||||||||||||    
T  44306106 ccaccttcttttatcttctataaaaacccatcatctttgtggtgt 44306150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 22893647 - 22893708
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 22893708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 29845336 - 29845416
Alignment:
Q  101 taaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||| ||||||| ||| ||||||||||||||| |||| ||| ||||||||| |||||||| ||||| | ||||||||    
T  29845336 taaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttaggaataaattttactcaggaaag 29845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 22893499 - 22893574
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaat 163  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | ||||||    
T  22893499 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 61 - 362
Target Start/End: Complemental strand, 13894127 - 13893814
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894127 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 13894028  T
Q  161 aatacatttttcccaggaaagcagctcccccacgttc------------cacatattttttctctcttttattcccatctgatagcttgggaaactttta 248  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894027 aatacatttttcccaggaaagcagctcccccacgttctcccccacgttccacatattttttctctcttttattcccatctgatagcttgggaaactttta 13893928  T
Q  249 ttcccaggaaatgtaaacccatgatctatttaaaaagtcatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgctaaacatt 348  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13893927 ttcccagaaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattctcgcttttctttctctgtgaactcctcttcccgctaaacatt 13893828  T
Q  349 ccaccttccctgat 362  Q
    ||||||||| ||||    
T  13893827 ccaccttccttgat 13893814  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 13331984 - 13331864
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||| |||    
T  13331984 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccagg 13331885  T
Q  161 aatacatttttcccaggaaag 181  Q
    |||||||||||  ||||||||    
T  13331884 aatacatttttttcaggaaag 13331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 13342899 - 13342779
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||  |||    
T  13342899 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcagg 13342800  T
Q  161 aatacatttttcccaggaaag 181  Q
    |||||||||||  ||||||||    
T  13342799 aatacatttttttcaggaaag 13342779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 13331792 - 13331699
Alignment:
Q  230 atagcttgggaaacttttattcccaggaaatgtaaacccatgatctatt-taaaaagtcatttatgcccctgcaattcccgcttttctttctctg 323  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||    ||||||  ||||| ||||| ||| ||||||||| |||||||||||    
T  13331792 atagcttgggaaagtttcattcccaggaattg-aaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctttctctg 13331699  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 5672455 - 5672335
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctagg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| |||||||||||||||  ||| ||| ||||  |||    
T  5672455 tgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcagg 5672356  T
Q  161 aatacatttttcccaggaaag 181  Q
    ||||||||||| |||||||||    
T  5672355 aatacattttttccaggaaag 5672335  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 21481133 - 21481226
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||| ||||| ||||||| || |||||||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||||    
T  21481133 attcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctcaggaaag 21481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 19700882 - 19700976
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | ||||||||| |||||||||||||||    
T  19700882 attccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaagc 19700976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 19701029 - 19701090
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    ||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||    
T  19701029 cttttattcccaagagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 19701090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 32718251 - 32718157
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| |||||||| || |||||||||||||||    
T  32718251 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaagc 32718157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 10637343 - 10637437
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | |||||| || |||||||||||||||    
T  10637343 attccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 10637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 10637492 - 10637550
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatga 272  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||||    
T  10637492 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatga 10637550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 32718102 - 32718041
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  ||| |||||||||| |||||||||||||||||| |||||||||||||    
T  32718102 cttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatgatct 32718041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 9319 - 9407
Alignment:
Q  94 aggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagc 182  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||  ||| ||||||| | |||||| || |||||||||||||||    
T  9319 aggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 9407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 9462 - 9523
Alignment:
Q  214 cttttattcccatctgatagcttgggaaacttttattcccaggaaatgtaaacccatgatct 275  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatct 9523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 15762394 - 15762307
Alignment:
Q  94 aggaatctaaggttggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 181  Q
    |||||||||||| ||||||  || ||| ||||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||    
T  15762394 aggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttcccaggaaag 15762307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 33117876 - 33117840
Alignment:
Q  11 ttatactaacaaagaaagtttcagggtatacgctgac 47  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  33117876 ttattctaacaaagaaagttccagggtatacgctgac 33117840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 41416287 - 41416251
Alignment:
Q  61 tgtgtttgtttcatggaatgaaaatgtattcctagga 97  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  41416287 tgtgtttgttacatggaatgaaaatgtattcccagga 41416251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 408 - 358
Alignment:
Q  88 attcctaggaatctaaggttggaattaaagattgctttgtttggtagatgg 138  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  408 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

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