View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_low_14 (Length: 392)

Name: NF19141_low_14
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_low_14
NF19141_low_14
[»] chr7 (2 HSPs)
chr7 (203-376)||(8179563-8179717)
chr7 (10-78)||(8179227-8179295)
[»] chr2 (2 HSPs)
chr2 (137-301)||(33662450-33662613)
chr2 (133-227)||(33662378-33662468)
[»] chr1 (4 HSPs)
chr1 (133-238)||(20014302-20014403)
chr1 (161-301)||(20014605-20014746)
chr1 (172-229)||(20014268-20014326)
chr1 (137-177)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (88-138)||(47444469-47444519)
chr3 (133-229)||(6524724-6524816)
chr3 (169-213)||(44364931-44364975)
chr3 (172-212)||(6524651-6524691)
chr3 (175-229)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (81-120)||(36130417-36130456)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 8179563 - 8179717
Alignment:
Q  203 ttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagatagatggtttgtattcgtct 302  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||                  |||||||||    
T  8179563 ttgtttaattagaaacttaggatttgaatcatatgcagtcatgtatcatgcagttgttgatctcggtcgtttg------------------tattcgtct 8179644  T
Q  303 gcaagtactggaacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat 376  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179645 gcaagtgctg-aacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat 8179717  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8179227 - 8179295
Alignment:
Q  10 tattctgattgtttgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179227 tattctgattgtttgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 8179295  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 33662450 - 33662613
Alignment:
Q  137 aattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatat 236  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||  ||    
T  33662450 aattggaaaattaagatttcacttatatgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattgaaaacttagaatttgactc--at 33662547  T
Q  237 gttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagat-agatggtttgtattcgtc 301  Q
    || | | ||||||||||||| ||| || || |||||||||  ||||| ||||||||||||||||||    
T  33662548 gtagccctgtatcatgcagtcgttaatctcagtcgtttgattgagatcagatggtttgtattcgtc 33662613  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 33662378 - 33662468
Alignment:
Q  133 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggattt 227  Q
    ||||| ||||||||| |||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  33662378 tttaatttggaaaataaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagattt 33662468  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 20014302 - 20014403
Alignment:
Q  133 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatc 232  Q
    ||||| |||||||||||||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| ||    
T  20014302 tttaatttggaaaattaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagagttgactc 20014397  T
Q  233 atatgt 238  Q
    ||||||    
T  20014398 atatgt 20014403  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 20014605 - 20014746
Alignment:
Q  161 atatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgtt 260  Q
    ||||||| |||||||||||||||||||| |||||  |||||||||| |||||  ||||||||||||||| |||  ||| | ||||||||||||| | |||    
T  20014605 atatgtagtgcatttaatttaatttaatcaattgcttcgtttttgtttaattaaaaacttaggatttgactcaagtgtagccatgtatcatgcaatcgtt 20014704  T
Q  261 gatatcggtcgtttgaaggagat-agatggtttgtattcgtc 301  Q
     || ||| |||||||| ||||||  ||||| |||||||||||    
T  20014705 aatctcgatcgtttgatggagatctgatggattgtattcgtc 20014746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 20014268 - 20014326
Alignment:
Q  172 atttaatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 229  Q
    ||||||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||||    
T  20014268 atttaatttaatttaatcaattgtgatgtttttgtttaatttggaaaattaggatttga 20014326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 20014374 - 20014414
Alignment:
Q  137 aattggaaaattaggatttgactcatatgtaatgcatttaa 177  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  20014374 aattggaaaattaagagttgactcatatgtagtgcatttaa 20014414  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 47444469 - 47444519
Alignment:
Q  88 aatttcaaattaacattagttagcaaagcaaaagtagtcaacgtctttaaa 138  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  47444469 aatttcaaatcaacattagttagcaaagcaaaagtggtcaacgtctttaaa 47444519  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 6524816 - 6524724
Alignment:
Q  133 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttga 229  Q
    ||||| |||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||||||||||  |||||| || ||| |||||||    
T  6524816 tttaatttggaaaattaggatttgact----tttagtgcatttaatttaacttaatcaattgtgtcgtttttgttcaattggtaaattaagatttga 6524724  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 44364931 - 44364975
Alignment:
Q  169 tgcatttaatttaatttaataaattgtgtcgtttttgtgtaattg 213  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44364931 tgcatttaatttaatttaatcaattgtgtcgtttttgtttaattg 44364975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 6524691 - 6524651
Alignment:
Q  172 atttaatttaatttaataaattgtgtcgtttttgtgtaatt 212  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6524691 atttaatttaatttaatcaattgtgtcgtttttgtttaatt 6524651  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 6524847 - 6524792
Alignment:
Q  175 taatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 229  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||||    
T  6524847 taatttaatttaatcaattgtgttgtttttgtttaatttggaaaattaggatttga 6524792  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 36130417 - 36130456
Alignment:
Q  81 attgatgaatttcaaattaacattagttagcaaagcaaaa 120  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36130417 attgatgaatttcaaattaacattaattagcaaagcaaaa 36130456  T

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