View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_15 (Length: 371)
Name: NF19141_low_15
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 29258329 - 29258674
Alignment:
| Q |
16 |
acaattccatagaagctcaaatcaa------agctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaagct |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258329 |
acaattccatagaagctcaaatcaaagtcaaagctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaagct |
29258428 |
T |
|
| Q |
110 |
actaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258429 |
actaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaataaataaaccaataactcatacaaaattatagagattagataaca |
29258528 |
T |
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| Q |
210 |
aaaatatcagcaataataaggtcatttcacatcaaaacccacgagcacatcataatgcaagcaactcttctaagtttg-aaaaatcaagagtataatgtt |
308 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29258529 |
aaaatatcagcaataataaggccatttcacatgaaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaaaatcaagagtataatgtt |
29258628 |
T |
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| Q |
309 |
ttctgattttgcagggaataagaagatcctaactttctccatcatt |
354 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29258629 |
ttctgattttgctgggaataagaagatcctaactttctccatcatt |
29258674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 29286658 - 29286534
Alignment:
| Q |
110 |
actaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataaca |
209 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||| | |||||||||||||||| |||||||||||| || | |||||| |
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| T |
29286658 |
actaccaagatgtctacatagcatattgaaattacacaaggaagaaggttggcaataagtaaaccaataactcatgcaaaattatagatatca-ataaca |
29286560 |
T |
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| Q |
210 |
aaaatatcagcaataataaggtcatt |
235 |
Q |
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|||||||| |||| ||||||| |||| |
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| T |
29286559 |
aaaatatccgcaacaataaggccatt |
29286534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 35235085 - 35234990
Alignment:
| Q |
135 |
ttgaaattatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataagg |
230 |
Q |
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|||||| || ||||||| |||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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| T |
35235085 |
ttgaaagtacacaaggaagaaggttggcaataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagcaacaataagg |
35234990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 29262360 - 29262294
Alignment:
| Q |
166 |
tattaaaccaataactcatacaaaattataga---gattagataacaaaaatatcagcaataataag |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
29262360 |
tattaaaccaataactcatacaaaattatagatattattagataacaaaaatatcagcaacaataag |
29262294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 29382438 - 29382492
Alignment:
| Q |
18 |
aattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
72 |
Q |
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|||||||||||||| | || ||||||||||||||||| ||||||||||||||||| |
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| T |
29382438 |
aattccatagaagccccaaccaaagctgacgcaaccccaatcttcaagtaccaat |
29382492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 21347642 - 21347696
Alignment:
| Q |
18 |
aattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
72 |
Q |
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|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
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| T |
21347642 |
aattccatagaagctccaaccaaagctgacgcaaccccaatcttcaagtaccaat |
21347696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 24454 - 24508
Alignment:
| Q |
18 |
aattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
72 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||||| |||||||||| |
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| T |
24454 |
aattccatagaagctccaaccaaagctgacgcaaccccaatcttaaagtaccaat |
24508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21360957 - 21361012
Alignment:
| Q |
18 |
aattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaatt |
73 |
Q |
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|||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| |
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| T |
21360957 |
aattccgtagaagctccacccaaagctgacgcaaccccaatcttcaagtaccaatt |
21361012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 21359346 - 21359292
Alignment:
| Q |
18 |
aattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
72 |
Q |
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|
||||| |||||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
21359346 |
aattcgatagaagctccaccaaaagctgacgcaaccccaatcttcaagtaccaat |
21359292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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