View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19141_low_18 (Length: 295)

Name: NF19141_low_18
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19141_low_18
NF19141_low_18
[»] chr1 (17 HSPs)
chr1 (18-282)||(13614460-13614733)
chr1 (18-289)||(20508226-20508506)
chr1 (114-280)||(13438928-13439094)
chr1 (112-282)||(13554851-13555021)
chr1 (20-282)||(13688913-13689181)
chr1 (112-287)||(15893652-15893827)
chr1 (116-282)||(19134070-19134236)
chr1 (116-282)||(20380205-20380371)
chr1 (116-282)||(13519489-13519655)
chr1 (182-285)||(16446191-16446294)
chr1 (21-82)||(13519388-13519449)
chr1 (21-82)||(19134276-19134337)
chr1 (18-102)||(16446374-16446458)
chr1 (21-98)||(13438829-13438906)
chr1 (21-82)||(13554754-13554815)
chr1 (21-82)||(15893863-15893924)
chr1 (21-82)||(20380104-20380165)
[»] scaffold0238 (1 HSPs)
scaffold0238 (38-289)||(26308-26568)
[»] chr6 (1 HSPs)
chr6 (112-282)||(22271167-22271337)
[»] scaffold0006 (2 HSPs)
scaffold0006 (20-287)||(61708-61981)
scaffold0006 (116-280)||(177344-177508)
[»] scaffold0069 (3 HSPs)
scaffold0069 (116-282)||(59994-60160)
scaffold0069 (116-279)||(44898-45061)
scaffold0069 (21-82)||(59893-59954)
[»] chr8 (1 HSPs)
chr8 (116-282)||(20766542-20766708)
[»] chr2 (1 HSPs)
chr2 (112-282)||(38049000-38049170)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 13614460 - 13614733
Alignment:
Q  18 gaatcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaaga----- 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  13614460 gaatcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaagatattt 13614559  T
Q  113 ----atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaa 208  Q
        ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13614560 cctaatcttgaaacatttcaagtgcgtaatagttcctttaacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaa 13614659  T
Q  209 taagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  13614660 taagaaaattatggctttttgaattggaaaagctcgagcacatctggcaggaagactttccactgaatcatcct 13614733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 20508506 - 20508226
Alignment:
Q  18 gaatcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaaga----- 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         
T  20508506 gaatcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaacatcttcacaagatattt 20508407  T
Q  113 ----atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaa 208  Q
        ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20508406 cctaatcttgaaacatttcaagtgcgtaatagttcctttgtcgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaa 20508307  T
Q  209 taagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctatgctac 289  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||    
T  20508306 taagaaaattatggctttttgaattggaaaagctcgagcacatctggcaggaaaactttccactggatcatcctctgctac 20508226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 13438928 - 13439094
Alignment:
Q  114 tcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataaga 213  Q
    |||||||| ||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13438928 tcttgaaacatttcaagtgcgtaatagttcttttgcaacattgttccccactaaaggaaccactgatcatctcagtatgcaactttcaaagcaaataaga 13439027  T
Q  214 aaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatc 280  Q
    || || |||||||||||||||||||||||| ||||  | ||||||| |||||||||| |||||||||    
T  13439028 aagttgtggctttttgaattggaaaagctcaagcacgtttggcaggtagactttccattggatcatc 13439094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 282
Target Start/End: Original strand, 13554851 - 13555021
Alignment:
Q  112 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 211  Q
    |||||||||| ||||||||||||||| ||||| |||||  |||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  13554851 aatcttgaaacatttcaagtgcgtaacagttcctttgaaatattgttccccactaaaagaacaactgatcatctcagtatgcaaatttcaaagaaaataa 13554950  T
Q  212 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
    |||| || ||||||||||||||||||||||||||| | || ||||| ||||| |||||| |||||||||||    
T  13554951 gaaatttgtggctttttgaattggaaaagctcgagtacatctggcatgaagattttccattggatcatcct 13555021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 13688913 - 13689181
Alignment:
Q  20 atcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaaga------- 112  Q
    ||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| | || |||| ||||||| |  |  || || |           
T  13688913 atcaagaaaatatatttcataaagttgaatttcttcgtttgcaactgtttgatgaaactcctactatttttatgaatgacttaca-cataatatttccta 13689011  T
Q  113 atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataag 212  Q
    ||||| ||  ||||||||| ||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||    
T  13689012 atcttcaagaatttcaagtccgtaatagttcctttgaaatattgttccccactaaaggagccactgatcatctcaatatgcaaatttcaaagcaaatgag 13689111  T
Q  213 aaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
    ||  ||   ||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||    
T  13689112 aatgttgatgctttttgaattggaaaagctcgagcacatctggcaggaagaatttccattggatcatcct 13689181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 287
Target Start/End: Complemental strand, 15893827 - 15893652
Alignment:
Q  112 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 211  Q
    |||||||||| |||||| ||  ||||| |||| |||||  |||||||||| ||||||||||||||| ||||||||| || ||||||||||| ||||||||    
T  15893827 aatcttgaaacatttcatgtttgtaatggttcctttgaaatattgttccccactaaaggaaccacttatcatctcactacgcaaatttcaatgcaaataa 15893728  T
Q  212 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctatgct 287  Q
    |||| || ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||    
T  15893727 gaaatttgtggatttttgaattggaaaagctcgagcacatatggcaggaaaactttccaccggatcatcctctgct 15893652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 282
Target Start/End: Complemental strand, 19134236 - 19134070
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   ||||| |||  |||||||| ||||   | |||||||||||||||| ||||| |||||||||||    
T  19134236 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgtaccccgctaaaggagccacaagttatctcagtatgcaaatgtcaaatcaaataagaaa 19134137  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
     || |||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  19134136 gttgtggctttttgaattggaaaagctcaagcacgtatggcaggaagactttccattggatcatcct 19134070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 20380205 - 20380371
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   ||||||| | ||||||||||||||   | |||||||||||||||  ||||| |||||||||||    
T  20380205 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttcaccactaaaggaaccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 20380304  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
     || ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||    
T  20380305 gttgtggctttttgaattggacaagctcaagcacatctggcaggaagactttccattggatcatcct 20380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 13519489 - 13519655
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   ||||||||| ||||||||||||||   | |||| ||| ||||||| ||||| |||||||||||    
T  13519489 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccactaaaggaaccacaagttatcttagtttgcaaatgtcaaatcaaataagaaa 13519588  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
     || |   |||||||| |||||||||| || || || ||||||||||||||||||||| ||||||||    
T  13519589 gttgtttttttttgaaatggaaaagctagaacacatttggcaggaagactttccactgaatcatcct 13519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 16446294 - 16446191
Alignment:
Q  182 atctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcc 281  Q
    |||||| | |||||| |||||||||||||||||| || |||||||||||||||||||| ||| |||| || |||||||||| ||| ||| ||||||||||    
T  16446294 atctcaatttgcaaacttcaaagcaaataagaaacttgtggctttttgaattggaaaatctcaagcacatctggcaggaagtcttcccattggatcatcc 16446195  T
Q  282 tatg 285  Q
    ||||    
T  16446194 tatg 16446191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 13519388 - 13519449
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    |||||||||||| |||||||||||  ||||| ||||||||||||  || |||||||||||||    
T  13519388 tcaagaaaatatttttcataaagtcaaatatcttcgtttgcaatgcttcgatgaaactccaa 13519449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 19134337 - 19134276
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||||  || |||||||||||||    
T  19134337 tcaagaaaatatctttcataaagtcaaatatcttcgtttacaatgcttcgatgaaactccaa 19134276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 16446458 - 16446374
Alignment:
Q  18 gaatcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatat 102  Q
    ||||||||||||||||| | || ||||| ||  | ||||||||||||  || ||||||||||||  ||||||| |||||||||||    
T  16446458 gaatcaagaaaatatctataatgaagttcaaattcttcgtttgcaatgcttggatgaaactccagctacttttctgaatgaatat 16446374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13438829 - 13438906
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatga 98  Q
    ||||||||||||||||||||||||| ||    ||||||| ||||  || ||||||||||||| || |||| |||||||    
T  13438829 tcaagaaaatatctttcataaagttaaactacttcgtttacaatgcttcgatgaaactccaactatttttctgaatga 13438906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 13554754 - 13554815
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    ||||||||||||||||||||||||  ||| | ||||||| ||||  || |||||||||||||    
T  13554754 tcaagaaaatatctttcataaagtcaaatttcttcgtttacaatgcttcgatgaaactccaa 13554815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 15893924 - 15893863
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    ||||||| | ||||||||||||||||||  | ||||||||||||  || |||||||||||||    
T  15893924 tcaagaagacatctttcataaagttgaacgtcttcgtttgcaatgcttcgatgaaactccaa 15893863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 20380104 - 20380165
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    ||||||||||||||||||||||||  ||| | ||||||| ||||  || |||||||||||||    
T  20380104 tcaagaaaatatctttcataaagtcaaatttcttcgtttacaatgcttcgatgaaactccaa 20380165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 26568 - 26308
Alignment:
Q  38 ataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaaga---------atcttgaaatatttca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||  ||||||    
T  26568 ataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaagatatttcctaatcttgaagcatttca 26469  T
Q  129 agtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggcttttt 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26468 agtgcgtaatagttcctttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggcttttt 26369  T
Q  229 gaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctatgctac 289  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  26368 gaattggaaaagctcgagcacatctggcaggaagactttccactggatcatcctctgctac 26308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 22271337 - 22271167
Alignment:
Q  112 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 211  Q
    |||||||||| ||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  22271337 aatcttgaaacatttcaagtgcgtaatagttcctttgaaatattgttccccactaaaggaaccactgatcatctcagtatgcaactttcaaggcaaataa 22271238  T
Q  212 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
    |||| || ||||||||||| |||||||| ||| ||||  ||||||||| |||||||||| |||||||||||    
T  22271237 gaaagttgtggctttttgatttggaaaatctcaagcacgtatggcaggtagactttccattggatcatcct 22271167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 61708 - 61981
Alignment:
Q  20 atcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaattacttttttgaatgaatatcttcacaaga------- 112  Q
    ||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| | || |||| ||||||| | ||  || || |           
T  61708 atcaagaaaatatatttcataaagttgaatttcttcgtttgcaactgtttgatgaaactcctactatttttatgaatgactttca-cataatatttccta 61806  T
Q  113 atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataag 212  Q
    ||||| ||  ||||||||| ||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||| ||    
T  61807 atcttaaagaatttcaagtccgtaatagttcctttgaaatattgttccccactaaaggagccactgatcatctcaatatgaaaatttcaaagcaaatgag 61906  T
Q  213 aaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctatgct 287  Q
    ||  ||   |||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||| ||||    
T  61907 aatgttgatgctttttgaattggaaaagctcgagtttatatggcatgaagactttccattggatcatcctctgct 61981  T

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Target: scaffold0006; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 280
Target Start/End: Original strand, 177344 - 177508
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   ||||||||| ||||||||| |||    | |||||||||||||||| ||||| |||||||||||    
T  177344 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccactaaaggagccagaagttatctcagtatgcaaatgtcaaatcaaataagaaa 177443  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatc 280  Q
      | ||||||||||||||||| |||||| |||| || ||||||||||| |||||| |||||||||    
T  177444 gatgtggctttttgaattggacaagctcaagcacatctggcaggaagattttccattggatcatc 177508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 59994 - 60160
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   ||||||| | ||||||||||||||   | |||||||||||||||  ||||| |||||||||||    
T  59994 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttcaccactaaaggaaccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 60093  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
     || ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||    
T  60094 gttgtggctttttgaattggacaagctcaagcacatctggcaggaagactttccattggatcatcct 60160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 44898 - 45061
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||| ||||| ||||||||||||||||   ||||||||| ||||||||| ||||   | |||||||||||||||  ||||| |||||||||||    
T  44898 ttgaaacatttaaagtgtgtaatagttcttttgaaacattgttccccactaaaggagccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 44997  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcat 279  Q
     || ||||||||||||||||| |||||| ||||  | |||||||||||||||||| ||||||||    
T  44998 gttgtggctttttgaattggacaagctcaagcacgtctggcaggaagactttccattggatcat 45061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 59893 - 59954
Alignment:
Q  21 tcaagaaaatatctttcataaagttgaatatgttcgtttgcaattgtttgatgaaactccaa 82  Q
    ||||||||||||||||||||||||  ||| | ||||||| ||||  || |||||||||||||    
T  59893 tcaagaaaatatctttcataaagtcaaatttcttcgtttacaatgcttcgatgaaactccaa 59954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 116 - 282
Target Start/End: Complemental strand, 20766708 - 20766542
Alignment:
Q  116 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 215  Q
    |||||| |||||||||||||||||||||||||||   |||||||||  |||||||| ||||   | |||||||||||||||| ||||| |||||||||||    
T  20766708 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccgctaaaggagccacaagttatctcagtatgcaaatgtcaaatcaaataagaaa 20766609  T
Q  216 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
     || ||||||||||||||||| |||||| | ||| | |||||||||||||||||| ||||| |||||    
T  20766608 tttgtggctttttgaattggacaagctcaaccatgtctggcaggaagactttccattggattatcct 20766542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 38049170 - 38049000
Alignment:
Q  112 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 211  Q
    |||||||||| |||||||||||||||||||||||||||   ||||||||| ||||||| |||||| | | ||||||||| |||||| | ||| |||||||    
T  38049170 aatcttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccctactaaagtaaccacagcttatctcagtaagcaaatgttaaatcaaataa 38049071  T
Q  212 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 282  Q
    |||  ||    |||||||| |||||||||||| ||||  | |||||||||||||||||| |||| ||||||    
T  38049070 gaatgttgattctttttgatttggaaaagctcaagcacgtctggcaggaagactttccattggaccatcct 38049000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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