View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19141_low_19 (Length: 295)
Name: NF19141_low_19
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_19 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 9351039 - 9350758
Alignment:
| Q |
14 |
atatctttaattggaaagatatcgagaatttattcttaacttactgcacatacaaattttgtttgtgatattgaaaagtatggattactcatactcttcg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9351039 |
atatctttaattggaaagatatcgagaatttattcttaacttactgcacgtacaaattttttttgtgatattgaaaagtatggattactcatactcttcg |
9350940 |
T |
|
| Q |
114 |
aagatataatcatgttttaagaaaagttatgatatgatcaaagaatttgtgacttttcagatataatcgtatcaattactacagtctacacaaatttctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9350939 |
aagatataatcatgttttaagaaaagttatgatatgatcaaagaatttgtgacttttcagatataatcgtatcaattactacagtctacacaaatttctc |
9350840 |
T |
|
| Q |
214 |
tttccccttctatgcaatttgcaatagagctgcacatatttacaaagacgagtcaacaagatgaaaaggaaaagatgagtca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
9350839 |
tttccccttctatgcaatttgcaatagagctgcacatatttacaaagatgagtcaacaagatgaaaaggaaaatatgagtca |
9350758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 9331312 - 9331203
Alignment:
| Q |
14 |
atatctttaattggaaagatatcgagaatttattcttaacttactgcacatacaaattttgtttgtgatattgaaaagtatggattactcatactcttcg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9331312 |
atatctttaattggaaagatatcgagaatttattcttaacttactgcacgtacaaattttttttgtgatattgaaaagtatggattactcatactcttcg |
9331213 |
T |
|
| Q |
114 |
aagatataat |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
9331212 |
aagatataat |
9331203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 9331211 - 9331087
Alignment:
| Q |
172 |
agatataatcgtatcaattactacagtctacacaaatttctctttccccttctatgcaatttgcaatagagctgcacata-tttacaaagacgagtcaac |
270 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
9331211 |
agatataattgtatcaattactacagtctacacaaatttctctttccccttctatgcaattcgcaatagagctgcacatattttacaaagatgagtcaac |
9331112 |
T |
|
| Q |
271 |
aagatgaaaaggaaaagatgagtca |
295 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
9331111 |
aagatgaaaagtaaaagatgagtca |
9331087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 42939729 - 42939452
Alignment:
| Q |
15 |
tatctttaattggaaagatatcgagaatttattcttaacttactgcacatacaaattttgtttgtgatattgaaaagtatggattactcatactcttcga |
114 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
42939729 |
tatctttaattgaaaagatattgaaaatttattcttaacttactgcacatgcaacttttatttgtgaaattgaaaagtatggattactcatactcttcaa |
42939630 |
T |
|
| Q |
115 |
agatataatcatgttttaagaaaagttatgatatgatcaaagaatttgtgacttttcagatataatcgtatcaattactacagtctacacaaatttctct |
214 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||||||||||| || ||||||||| | ||| |||||||| ||||| ||||||||||| |
|
|
| T |
42939629 |
agatataat---gttttaggaaaagttatgatacgatgaaagaatttgtgatttcaaagatataattgcatctattactaccgtctaagcaaatttctct |
42939533 |
T |
|
| Q |
215 |
ttccccttctatgcaatttgcaatagagctgcacatatttacaaagacgagtcaacaagatgaaaaggaaaagatgagtca |
295 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||| | |||||| | ||||| |||||||| |
|
|
| T |
42939532 |
ttccccttctatgcaatatgcaatagagttgcacatatcgacaaagatgagtcaatatgatgaacaagaaaatatgagtca |
42939452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 293
Target Start/End: Original strand, 31087775 - 31087930
Alignment:
| Q |
136 |
aaagttatgatatgatcaaagaatttgtgacttttcagatataatcgtatcaattactacagtctacacaaatttctctttccccttctatgcaatttgc |
235 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| | |||||||||| |||| ||||| || ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
31087775 |
aaagttataatatgatcaaagaattggtgacatcaaagatataatcttatccattacgactgtctatgcaaatttctc-ttccccttctatgcaatttgc |
31087873 |
T |
|
| Q |
236 |
aatagagctgcacatatttacaaagacgagtcaacaagatgaaaaggaaaagatgagt |
293 |
Q |
| |
|
|| | ||||||||||||||| |||| || |||||| |||||||||||||| |||||| |
|
|
| T |
31087874 |
-attgtgctgcacatatttacgaagatgaatcaacatgatgaaaaggaaaatatgagt |
31087930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 31087681 - 31087729
Alignment:
| Q |
40 |
aatttattcttaacttactgcacatacaaattttgtttgtgatattgaa |
88 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31087681 |
aatttattattaacttactgcacatacaaattttgtttgtgacattgaa |
31087729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 4864580 - 4864654
Alignment:
| Q |
78 |
gtgatattgaaaagtatggattactcatactcttcgaagatataatcatgttttaagaaaagttatgatatgatc |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
4864580 |
gtgatattgaaaactatggattactcatactcttaaaagatatcattttgttttaagaaatattatgatatgatc |
4864654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 4864710 - 4864748
Alignment:
| Q |
68 |
aattttgtttgtgatattgaaaagtatggattactcata |
106 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
4864710 |
aatttcgtttgtgatattgaaaagtatgaattactcata |
4864748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University