View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_22 (Length: 285)
Name: NF19141_low_22
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 53538451 - 53538592
Alignment:
| Q |
40 |
tataaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaatcctcatcatatgattgttgaagcctttgatcaagtgaggacatgg |
139 |
Q |
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| T |
53538451 |
tataaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatgg |
53538550 |
T |
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| Q |
140 |
agcctacatggtcacttaaccttccttctataattcattcaa |
181 |
Q |
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| T |
53538551 |
agcctacatggtcacctaaccttccttctataattcattcaa |
53538592 |
T |
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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 10604158 - 10604071
Alignment:
| Q |
179 |
caaacaaagatgatgattccttcatttgagcataagtataaaataatgaaccagtaggattaagaacatataaagtcaacaatgacat |
266 |
Q |
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| T |
10604158 |
caaacaacgatgatgattccttcatttgaacataagtataaaataatgaaccagtaggattaagaacatataaagtcaacaatcacat |
10604071 |
T |
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