View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_27 (Length: 247)
Name: NF19141_low_27
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 2173896 - 2173775
Alignment:
| Q |
48 |
taccaaacgaagagaccaactccaccagcttcttgcaaaactcttcctcccaaac--agaatggcagcctccatttactccactacaaccacttaccatc |
145 |
Q |
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| T |
2173896 |
taccaaacgaagagaccaactccaccagcttcttgcaaaactcttcctcccaaacaaagaatggcagcctccatttactccgccacaaccacttaccatc |
2173797 |
T |
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| Q |
146 |
tg-cccactccccaaaatcgga |
166 |
Q |
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| T |
2173796 |
tgccccactccccaaaatcgga |
2173775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 2173751 - 2173690
Alignment:
| Q |
166 |
acaactaataaaatcttgggaagccttgcttaagatgtaaatttccacagctacacattatat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2173751 |
acaactaataaaatcttgggaagccttgcttaagatgtaaatttccacagc-acacattatat |
2173690 |
T |
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