View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_29 (Length: 242)
Name: NF19141_low_29
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_29 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 14579663 - 14579889
Alignment:
| Q |
16 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14579663 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacaggaaggtaattccattgaagcac |
14579762 |
T |
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| Q |
116 |
taaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagc |
215 |
Q |
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| T |
14579763 |
taaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccaaaataaaccattccaagtccaattccaagaatcataacagc |
14579862 |
T |
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| Q |
216 |
tatcattcttataacagcccatctttt |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14579863 |
tatcattcttataacagcccatctttt |
14579889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 14543924 - 14543698
Alignment:
| Q |
16 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
14543924 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacatgaaggtaattccattgaagcac |
14543825 |
T |
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| Q |
116 |
taaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagc |
215 |
Q |
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| T |
14543824 |
taaaaaccactgccaattaaatgttgaatcctaaatttccaacagctagtggcatacctaaataaaccattccaagtccaattccaagaatcataacagc |
14543725 |
T |
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| Q |
216 |
tatcattcttataacagcccatctttt |
242 |
Q |
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| T |
14543724 |
tatcattcttataacagcccatctttt |
14543698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 34262871 - 34263097
Alignment:
| Q |
16 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcac |
115 |
Q |
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||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||| |
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| T |
34262871 |
caaattccacctaagattgagaaaacaagaattgaaggttttcttctatagttttccaagaaatatgttgctacacatgagggtatttccattgaagcac |
34262970 |
T |
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| Q |
116 |
taaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagc |
215 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
34262971 |
taaaaaccacagccaaataaatattgaatcccaaatttccaactgctagtggcataccaagataaaccattccaattccaattccaagaatcataacagc |
34263070 |
T |
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| Q |
216 |
tatcattcttataacagcccatctttt |
242 |
Q |
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||| |||||||||| |||||||||||| |
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| T |
34263071 |
tattattcttataagagcccatctttt |
34263097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 35621792 - 35622018
Alignment:
| Q |
16 |
caaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcac |
115 |
Q |
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|||||||||| |||||| || || |||||||||||| ||||||||||||||||||||||||| ||| | ||||| || ||||||| |||||||||||||| |
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| T |
35621792 |
caaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtatattgctacgcaagaaggtatttccattgaagcac |
35621891 |
T |
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| Q |
116 |
taaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagc |
215 |
Q |
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||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||| |
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| T |
35621892 |
taaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacagc |
35621991 |
T |
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| Q |
216 |
tatcattcttataacagcccatctttt |
242 |
Q |
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|||||||||||||| ||||||| |||| |
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| T |
35621992 |
tatcattcttataagagcccatttttt |
35622018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 37577599 - 37577694
Alignment:
| Q |
42 |
aagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaat |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| || |||||||||| |||||||||||||||| ||||| |
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| T |
37577599 |
aagaattgaaggttttcttctatagttttccaagaaatatgttactaaacataaaggtattttcattgaagcattaaaaaccacagccaaataaat |
37577694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 10404865 - 10404724
Alignment:
| Q |
70 |
tccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggca |
169 |
Q |
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||||||||||| || || ||||| || |||| |||||| | ||| |||| || || ||||||||||||| ||||||||| |||||||| || ||||||| |
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| T |
10404865 |
tccaagaaataagtagcaacacaagacggtatttccatcaaggcattaaacacaacggccaagtaaatgtcgaatcctaagtttccaacggcgagtggca |
10404766 |
T |
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| Q |
170 |
taccgaaataaaccattccaagtccaattccaagaatcataa |
211 |
Q |
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|||| |||||||||||||||| ||| || ||||||| ||||| |
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| T |
10404765 |
taccaaaataaaccattccaattcccataccaagaaccataa |
10404724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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