View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19141_low_32 (Length: 215)
Name: NF19141_low_32
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 53538496 - 53538592
Alignment:
| Q |
15 |
taattctaatcctcatcatatgattgttgaagcctttgatcaagtgaggacatggagcctacatggtcacttaaccttccttctataattcattcaa |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53538496 |
taattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatggagcctacatggtcacctaaccttccttctataattcattcaa |
53538592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 10604158 - 10604071
Alignment:
| Q |
109 |
caaacaaagatgatgattccttcatttgagcataagtataaaataatgaaccagtaggattaagaacatataaagtcaacaatgacat |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10604158 |
caaacaacgatgatgattccttcatttgaacataagtataaaataatgaaccagtaggattaagaacatataaagtcaacaatcacat |
10604071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University