View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_4 (Length: 701)
Name: NF19141_low_4
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 349
Target Start/End: Original strand, 14010154 - 14010463
Alignment:
| Q |
25 |
atcgagttgaattaatctgaactcttcactttgaaaatggaatttacataaaacagtggaacatacaatacatcatttaataaaagagtaactattatag |
124 |
Q |
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| T |
14010154 |
atcgagttgaattaatctggattcttcactttgaaaatagaatttacataaaatagtggaacatacaatacatcatttaataaaagagtaactattatag |
14010253 |
T |
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| Q |
125 |
aaaatattcaaaagatagttttgctatcatttcactgttatatatattgttgaaattttttagttgattatattctcacgcttttcacccatgtcatggc |
224 |
Q |
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| T |
14010254 |
aaaatattcaaaagatagtgttgctatcgtttcactgttatatatattgttgaaattttttagttgattatattctcacgctttt--------------- |
14010338 |
T |
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| Q |
225 |
caatcgatgttgtttgtgtgaaagctattatgagatggaaagaaaaaggtgtggtgacacaaaaaagttgattataaatcgatttaactggagttgacac |
324 |
Q |
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| T |
14010339 |
caatcgatgttgtttgtgtgaaagctattatgagatggaaagaaaaaggtgtggtgacacaaaaaagttgattataaatcgatttaactggagttgacac |
14010438 |
T |
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| Q |
325 |
aaaaaagttgcatccttctttcaca |
349 |
Q |
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| T |
14010439 |
aaaaaaattgcatccttctttcaca |
14010463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 14010496 - 14010545
Alignment:
| Q |
370 |
aaattagtctgttcacaaattgtgaattattgataactttgattttaaat |
419 |
Q |
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| T |
14010496 |
aaattagtctgttcacaaattgtgaattattgataactttgattttaaat |
14010545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 10830746 - 10830798
Alignment:
| Q |
417 |
aattcaaaattaatttacacaaagttagtgagtatttaacttatttgatatat |
469 |
Q |
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| T |
10830746 |
aattgaaaattaatttaaacaaagttagagaatatttaagttatttgacatat |
10830798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 15328462 - 15328418
Alignment:
| Q |
425 |
attaatttacacaaagttagtgagtatttaacttatttgatatat |
469 |
Q |
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| T |
15328462 |
attaatttatacaaagttagtgaatatttaagttatttaatatat |
15328418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 14767883 - 14767927
Alignment:
| Q |
425 |
attaatttacacaaagttagtgagtatttaacttatttgatatat |
469 |
Q |
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| T |
14767883 |
attaatttatacaaagttagtgaatatttaagttatttaatatat |
14767927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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