View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_5 (Length: 693)
Name: NF19141_low_5
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Complemental strand, 30855653 - 30855013
Alignment:
| Q |
14 |
catcaaatgatcactaccaattgtcctcaaactggcacaaatggtggtagcctaattgctagggttctccgaccattacctggatcaaacaccatgccat |
113 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30855653 |
catcaaatgatcactaccaactgtcctcaaactggcacacatggtggtagcctaattgctagggttctccgaccattacctggatcaaacaccatgccat |
30855554 |
T |
|
| Q |
114 |
tcccaagtggatctaggcaaatggtgccttggagtcagacagagcatgagtaattgcatctctcatccttaaatctaattaattttttgttattatgatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30855553 |
tcccaagtggatctaggcaaatggtgccttggagtcagacagagcatgagtaattgcatctctcatccttaaatctaattaattttttattattatgatg |
30855454 |
T |
|
| Q |
214 |
tcactgcacttctatggttaaaaatcctcaattttttctttccctaatatttgtcattattttaaattttc-ttgtaatactctttatattctcatttct |
312 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
30855453 |
tcactgcacttctatggttaaaaatcctcaattttttcttttcctaatatttgtcattattttaatttttctttgcaatactctttatattctcatttct |
30855354 |
T |
|
| Q |
313 |
actccacttattggccattatttaaacttttctggcaatgattttcttacattcatttctacttagttttagtag-aaaaaacttgaaatagagacaata |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30855353 |
actccacttattggccattatttaaacttttctggcaatgattttcttacattcatttctacttagttttagtagaaaaaaacttgaaatagagacaata |
30855254 |
T |
|
| Q |
412 |
ttaagagatagaaatnnnnnnnntgtctataaatttgtaaatagaagtgttagacatgtctagtttagtgatcagtttttgttttcgtttctaatactta |
511 |
Q |
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||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30855253 |
ttaagagatagaaataaaaaaaatgtctatgaatttgtcaatagaagtgttagacatgtctagtttggtgatcagtttttgttttcgtttctaatactta |
30855154 |
T |
|
| Q |
512 |
ttgttatttcaactttttaaattaattctttctacactttcatttcaacttcaattaaaccttcctaggttattaaatattaaatttttgtcaaaaaagg |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30855153 |
ttgttatttcaactttttaaattaattctttctacactttcatttcaacttcaattaaaccttcctaggttattaaatattaaatttttgtcaaaaaagg |
30855054 |
T |
|
| Q |
612 |
ttattaaataatgtgcaagcattgattattgttgttgcctt |
652 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
30855053 |
ttattaaataatgtgcaagcattgattattgttgttgcctt |
30855013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 30879550 - 30879490
Alignment:
| Q |
141 |
cttggagtcagacagagcatgagtaattgcatctctcatccttaaatctaattaatttttt |
201 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| | | ||||||||||||||||||||| |
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| T |
30879550 |
cttggagtcaattagagcatgagtaattacatcttttaaacttaaatctaattaatttttt |
30879490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 15069599 - 15069765
Alignment:
| Q |
23 |
atcactaccaattgtcctcaaactggcacaaatggtggtagcctaattgctagggttctccgaccattacctggatcaaacaccatgccattcccaagtg |
122 |
Q |
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||||||||| |||| || ||| ||| |||| ||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| || |
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| T |
15069599 |
atcactaccgattggccccaacctgccacacatggtcgtagcctaattgctagggttcttcgaccgttacctggatcagacaccatgccattcccaaatg |
15069698 |
T |
|
| Q |
123 |
gatctaggcaaatggtgccttggagtcagacagagcatgagtaattgcatctctcatccttaaatct |
189 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||| |
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| T |
15069699 |
catctaggcttatggtgccttggagtcaattagagcatgagtaattacatctttcaaccttaaatct |
15069765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 15063033 - 15063168
Alignment:
| Q |
54 |
atggtggtagcctaattgctagggttctccgaccattacctggatcaaacaccatgccattcccaagtggatctaggcaaatggtgccttggagtcagac |
153 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||| ||| ||||||| ||||| ||||||||||| |
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| T |
15063033 |
atggtcgtagcctaattgctagggttcttcgaccatttcctcgatcagacaccatgccattcccaaatggttctaggcttatggttccttggagtcaatt |
15063132 |
T |
|
| Q |
154 |
agagcatgagtaattgcatctctcatccttaaatct |
189 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||| |
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| T |
15063133 |
agagcatgagtaattacatctctcaaccttaaatct |
15063168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 245 - 426
Target Start/End: Original strand, 15069875 - 15070056
Alignment:
| Q |
245 |
ttttttctttccctaatatttgtcattattttaaattttcttgtaatactctttatattctcatttctactccacttattggccattatttaaacttttc |
344 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| || | || | ||||||||||| ||||||||||||||||||||||||||||||||| || || || |
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| T |
15069875 |
ttttttctttccctaatttttgtaattattttaacttct-ttattgtactctttatactctcatttctactccacttattggccattatttcaaattctc |
15069973 |
T |
|
| Q |
345 |
tggcaatgattttcttacattcatttctactta-gttttagtagaaaaaacttgaaatagaga-caatattaagagatagaaat |
426 |
Q |
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|||||| ||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
15069974 |
tggcaacgattttcttacgctcacttctacttattttttagtag-aaaaacttgaaatagagattgaaattaagagatagaaat |
15070056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 15063275 - 15063364
Alignment:
| Q |
245 |
ttttttctttccctaatatttgtcattattttaaattttcttgtaatactctttatattctcatttctactccacttattggccattattt |
335 |
Q |
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|
||||||||||||||||||||||| |||||||||| || | || | |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15063275 |
ttttttctttccctaatatttgtaattattttaacttct-ttattatactctttatactctcatttctactccacttattggccattattt |
15063364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 553 - 641
Target Start/End: Original strand, 15063673 - 15063762
Alignment:
| Q |
553 |
atttcaacttcaattaaaccttcctaggttattaaatattaaatttttgtca-aaaaaggttattaaataatgtgcaagcattgattatt |
641 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||||| |
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|
| T |
15063673 |
atttcaactccaattaaacctacataggttattaaataataaattttggtcagaaaaagattattaaataatgtgcaagcatttattatt |
15063762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 554 - 641
Target Start/End: Original strand, 15070398 - 15070486
Alignment:
| Q |
554 |
tttcaacttcaattaaaccttcctaggttattaaatattaaatttttgtcaaaa-aaggttattaaataatgtgcaagcattgattatt |
641 |
Q |
| |
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|||||||| |||||||| ||| | |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
15070398 |
tttcaactccaattaaaactttatcggttattaaataataaattttggtcaaaaaaaggttattaaataatgtgcaagcatttattatt |
15070486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 563
Target Start/End: Original strand, 15070292 - 15070372
Alignment:
| Q |
483 |
tcagtttttgttttcgtttctaatacttattgttatttcaactttttaaattaattctttctacactttcatttcaacttc |
563 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||||||||||||||||||| |||| ||||||| ||| || |||||||||| |
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| T |
15070292 |
tcagtttttatttgcgtccctaatactctttgttatttcaactttttaatgtaatgctttctatactctcgtttcaacttc |
15070372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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