View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19141_low_6 (Length: 597)
Name: NF19141_low_6
Description: NF19141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19141_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 29322400 - 29321836
Alignment:
| Q |
14 |
ccaacgacctcgcatcgctgcaacaagcaatcgaagaatacactcaaaccaatagcgaatctttaatgaaaatctttaaatcattcgcacaccattacgt |
113 |
Q |
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| T |
29322400 |
ccaacgacctcgcatcgctgcaacaagcaatcgaagaatacactcaaaccaataacgaatctttaatgaaaatctttaaatcattcgcacaccattacat |
29322301 |
T |
|
| Q |
114 |
taatggcttctcattgaagcttgccaaaatcctcgaactccaccctccgctacaaacaagaaccgaaatcgtttctcttctacttcaaacacttcccaga |
213 |
Q |
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| T |
29322300 |
taatggcttctcattgaagcttgccaaaatcctcgaactccaccctccgctgcaaacaagaaccgaaatcgtttctcttctacttcaaacacttcccaga |
29322201 |
T |
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| Q |
214 |
gggataaacagttcaatgagtttgtctatccttctcaatctaaaaaatcctctcttaaattcgctcaaggtagaatccgaagaaattctgtttccttcgc |
313 |
Q |
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| T |
29322200 |
gggataaacagttcaatgagtttgtctatccttctcaatctaaaaaatcctctcttaaattcgctcaaggtagaatctgaagaaattctgtttccttcgc |
29322101 |
T |
|
| Q |
314 |
tatgcgaaatgatgggtttattcgctgacaggttgtaccggtttacttacagcagttgggtggagcttctccagtatgtttgcgattgcatttctgggga |
413 |
Q |
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| T |
29322100 |
tatgcgaaatgatgggtttattcgctgacaggttgtaccggtttacttacagcagttgggtggagcttctccagtatgtttgcgattgcatttctgggga |
29322001 |
T |
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| Q |
414 |
cgtgagatccaacaaaaagaaggggcttttgttgttaacagaattttcagcactcgttgttcaaaacagagagttctggctgaatcaagggaaccttgat |
513 |
Q |
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| T |
29322000 |
cgtgagatccaacaaaaagaaggggcttttgttgttaacggaattttcagcgcttgttgttcaaaacagagagttctggctgaatcaagggaaccttgat |
29321901 |
T |
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| Q |
514 |
ctcgtattctcaaacatctcaaatttgattaactcgatggatcaggaattgaatgcattggcatt |
578 |
Q |
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| T |
29321900 |
ctcgtattctcaaacatctcaaatttgattaactcgatggatcaggaattgaaagcattggcatt |
29321836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 405
Target Start/End: Complemental strand, 29304956 - 29304823
Alignment:
| Q |
272 |
attcgctcaaggtagaatccgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggtttacttacagcagttg |
371 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| || || ||||| | ||||||| | || ||| ||||| ||| || | || |||| |
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| T |
29304956 |
attcgcttaaggtagaatccgaagaaattctgtttcgttcgctgtgtgagatgatcgctttattcaccgaaaggctgtacatattttctctcggcggttg |
29304857 |
T |
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| Q |
372 |
ggtggagcttctccagtatgtttgcgattgcatt |
405 |
Q |
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| T |
29304856 |
ggaggagcttcttgagtatgtttgtgattgcatt |
29304823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 29333333 - 29333250
Alignment:
| Q |
272 |
attcgctcaaggtagaatccgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
355 |
Q |
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||||||| |||| ||||| ||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
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| T |
29333333 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
29333250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 507
Target Start/End: Complemental strand, 29304755 - 29304721
Alignment:
| Q |
473 |
ttcaaaacagagagttctggctgaatcaagggaac |
507 |
Q |
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| T |
29304755 |
ttcaagacagagagttctggctgaatcaagggaac |
29304721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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