View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19142_high_2 (Length: 503)

Name: NF19142_high_2
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19142_high_2
NF19142_high_2
[»] chr4 (14 HSPs)
chr4 (16-493)||(28689933-28690409)
chr4 (150-278)||(10441143-10441272)
chr4 (165-278)||(40071636-40071749)
chr4 (165-278)||(51744671-51744784)
chr4 (165-275)||(37064940-37065050)
chr4 (165-278)||(54438344-54438457)
chr4 (171-281)||(17493750-17493860)
chr4 (165-278)||(34408844-34408957)
chr4 (165-234)||(46870651-46870720)
chr4 (165-279)||(925323-925437)
chr4 (165-234)||(20789717-20789786)
chr4 (165-234)||(41555506-41555575)
chr4 (165-278)||(39787992-39788106)
chr4 (181-234)||(3172222-3172275)
[»] chr7 (15 HSPs)
chr7 (14-278)||(22619524-22619789)
chr7 (92-278)||(22337710-22337897)
chr7 (16-86)||(22337935-22338005)
chr7 (163-279)||(4040946-4041062)
chr7 (165-279)||(24300331-24300445)
chr7 (150-276)||(25943818-25943943)
chr7 (165-278)||(40232302-40232415)
chr7 (165-278)||(29737405-29737518)
chr7 (165-234)||(21442985-21443054)
chr7 (165-278)||(27596272-27596385)
chr7 (172-278)||(31689547-31689653)
chr7 (165-234)||(6392315-6392384)
chr7 (191-233)||(8577715-8577757)
chr7 (165-278)||(41427835-41427948)
chr7 (165-234)||(38276732-38276801)
[»] chr2 (10 HSPs)
chr2 (16-279)||(31921884-31922140)
chr2 (150-280)||(25898461-25898591)
chr2 (165-278)||(4828276-4828389)
chr2 (165-278)||(45080605-45080718)
chr2 (165-279)||(2110219-2110333)
chr2 (165-232)||(16964862-16964929)
chr2 (165-279)||(43370673-43370787)
chr2 (165-278)||(29193988-29194101)
chr2 (165-234)||(42847094-42847163)
chr2 (165-234)||(8381503-8381572)
[»] chr3 (12 HSPs)
chr3 (96-278)||(30459806-30459988)
chr3 (16-99)||(30462623-30462705)
chr3 (165-278)||(48169724-48169837)
chr3 (165-278)||(50676475-50676588)
chr3 (165-279)||(12568195-12568309)
chr3 (165-279)||(13544659-13544773)
chr3 (165-279)||(54014236-54014350)
chr3 (165-278)||(41346047-41346160)
chr3 (165-279)||(51545661-51545775)
chr3 (165-278)||(40496773-40496886)
chr3 (165-234)||(24709054-24709123)
chr3 (245-278)||(41346314-41346347)
[»] chr5 (8 HSPs)
chr5 (109-279)||(33403193-33403363)
chr5 (150-278)||(36768761-36768889)
chr5 (150-234)||(5712270-5712354)
chr5 (23-101)||(36768144-36768221)
chr5 (165-279)||(36982185-36982299)
chr5 (165-279)||(14044055-14044169)
chr5 (165-234)||(42897561-42897630)
chr5 (165-234)||(2970851-2970920)
[»] chr8 (12 HSPs)
chr8 (16-86)||(11147658-11147728)
chr8 (150-228)||(11146820-11146897)
chr8 (165-279)||(18575027-18575141)
chr8 (165-278)||(27820773-27820886)
chr8 (165-278)||(11254500-11254613)
chr8 (165-234)||(39906954-39907023)
chr8 (171-234)||(9753814-9753877)
chr8 (165-279)||(38070082-38070196)
chr8 (165-278)||(17493526-17493639)
chr8 (171-234)||(12738559-12738622)
chr8 (165-234)||(17336157-17336226)
chr8 (165-225)||(13243733-13243793)
[»] chr1 (11 HSPs)
chr1 (165-279)||(46370926-46371040)
chr1 (165-279)||(46862555-46862669)
chr1 (165-278)||(28036888-28037001)
chr1 (171-278)||(1929409-1929516)
chr1 (165-278)||(39151084-39151197)
chr1 (165-278)||(50776997-50777110)
chr1 (165-278)||(8229063-8229176)
chr1 (165-278)||(32045833-32045946)
chr1 (165-278)||(38321645-38321758)
chr1 (165-234)||(38817818-38817887)
chr1 (245-279)||(1929216-1929250)
[»] scaffold0047 (1 HSPs)
scaffold0047 (165-278)||(69753-69866)
[»] scaffold0318 (1 HSPs)
scaffold0318 (165-278)||(16357-16470)
[»] chr6 (10 HSPs)
chr6 (165-278)||(13041972-13042085)
chr6 (172-279)||(12350271-12350378)
chr6 (165-278)||(28541774-28541887)
chr6 (165-234)||(31833752-31833821)
chr6 (165-225)||(1870587-1870647)
chr6 (165-278)||(1241109-1241222)
chr6 (171-225)||(13210397-13210451)
chr6 (165-234)||(16435823-16435892)
chr6 (165-234)||(7271265-7271334)
chr6 (165-234)||(30736463-30736532)
[»] scaffold0061 (1 HSPs)
scaffold0061 (165-278)||(10204-10317)
[»] scaffold0519 (1 HSPs)
scaffold0519 (165-278)||(10780-10893)
[»] scaffold0532 (1 HSPs)
scaffold0532 (165-234)||(3858-3927)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 28689933 - 28690409
Alignment:
Q  16 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagttctaattgctttacgtgaagtaataagcat 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  28689933 caaattctgattggcttagttgtagcgtaaaccaacctttaatgcaccaatctaaatccttagccaaagttctgattgctttacgtgaagtagtaagcat 28690032  T
Q  116 gcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaag 215  Q
    | ||| |||||||||||| ||||||||       ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28690033 gtttgtcactcaatggagctgacacactttttttacatggagatcatacaagcaattataagggataaaattgtcaaattttgctttaaaatttgagaag 28690132  T
Q  216 gtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacggagggagtaagtgattaatagtttgatcgtaactcttatgtataga 315  Q
    ||||| ||||||| |||||         |||||||||||| |||||||| |||||||| | ||||||||||||||||||||| |||||||| ||||||||    
T  28690133 gtcaaatattttgcgacaatttttttt-acaaatatgtcagttattcagggacggaggaaataagtgattaatagtttgatcctaactcttgtgtataga 28690231  T
Q  316 gaattctctcaggtcgaaacttggtacaaataatatggtaaatatttgtgtctttattgacgctaacatgtgtatatatatacaactaattaacgttatt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28690232 gaattctctcaggtcgaaacttggtacaaataatatggtaaatatttgcgtctttattgacgctaacatgtgtatatatatacaactaattaacgttatt 28690331  T
Q  416 gttgtagtttgtctgtgaggatattctatgtagaattcttggtttgaatccggtcaccacatttcctgttcgtctgtg 493  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  28690332 gttgtagtttgtctgtaaggatattctatgtagaatttttggtttgaatccggtcaccacatttcctgttcgtgtgtg 28690409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 10441272 - 10441143
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac-aannnnnnnnnacaaa 248  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||    
T  10441272 acatggagaccatacaagcaattataagaggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaaatttttttttacaaa 10441173  T
Q  249 tatgtcacttattcagagacggagggagta 278  Q
    || ||||||||||||| |||||||||||||    
T  10441172 taggtcacttattcagggacggagggagta 10441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 40071636 - 40071749
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  40071636 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 40071735  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  40071736 ggacggagggagta 40071749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 51744671 - 51744784
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| |||||||||| ||    
T  51744671 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttatttag 51744770  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  51744771 ggacggagggagta 51744784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 37064940 - 37065050
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  37064940 aagtatttataaggggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataagtcacttattcag 37065039  T
Q  265 agacggaggga 275  Q
     ||||||||||    
T  37065040 ggacggaggga 37065050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 54438344 - 54438457
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| ||||||||| ||||||||         ||||||| |||||||||||||    
T  54438344 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcag 54438443  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  54438444 ggacggagggagta 54438457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 281
Target Start/End: Complemental strand, 17493860 - 17493750
Alignment:
Q  171 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgg 270  Q
    ||||||||| ||||  |||||||||||||||  |||| ||||||| ||||||||| || |||||         ||||||| ||||||||||||| |||||    
T  17493860 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgagacaaatattttttacaaataggtcacttattcagggacgg 17493761  T
Q  271 agggagtaagt 281  Q
    |||||||||||    
T  17493760 agggagtaagt 17493750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 34408844 - 34408957
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||| | |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  34408844 aagtatttataaggggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 34408943  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  34408944 ggacggagggagta 34408957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 46870720 - 46870651
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| |||||||||||||| |||||||||| | ||| ||||| |||| |||||||||||| ||||||||    
T  46870720 aagtatttataagggataaatttgtcaaattgtacttaaaaatctgagcaggtcaagtattgtgggacaa 46870651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 925323 - 925437
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| | ||| ||         ||||||| |||||||||||||    
T  925323 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtaggataaatattttttacaaataggtcacttattcag 925422  T
Q  265 agacggagggagtaa 279  Q
     ||||| ||||||||    
T  925423 ggacggtgggagtaa 925437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 20789786 - 20789717
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||||||||  ||||||||||| |||  |||| ||||||| ||||||||| ||||||||    
T  20789786 aagtatttataagggataaatctgtcaaattttacttagaaatctgagaagatcaagtattatgggacaa 20789717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 41555575 - 41555506
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    |||||| |||||||| |||| ||||||||||  |||| |||||||||||||||||| ||||  |||||||    
T  41555575 aagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgagaaggtcaattattgcgggacaa 41555506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 39788106 - 39787992
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac-aannnnnnnnnacaaatatgtcacttattca 263  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||| ||||||||||||| ||| || ||         ||||||| |||||||||| |    
T  39788106 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtggaacaaatatttttttacaaataggtcacttattta 39788007  T
Q  264 gagacggagggagta 278  Q
    |||||||||||||||    
T  39788006 gagacggagggagta 39787992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 3172222 - 3172275
Alignment:
Q  181 taaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    |||| |||||||||| |||||  ||||||||||| |||||||||| ||||||||    
T  3172222 taaatttgtcaaattctgcttagaaatttgagaaagtcaagtattgtgggacaa 3172275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 22619789 - 22619524
Alignment:
Q  14 atcaaattctgattggcttagttgtagtgtaaaccaaccttt-aatgcaccaatctaaatcctaagccaaagttctaattgctttacgtgaagtaataag 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||    
T  22619789 atcaaattctgattggcttagttgtagtgtaaaccaacctttcaatgcaccaatctaaatctttagccaaagttctgattgctttacgtgaagtagtaag 22619690  T
Q  113 catgcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgag 212  Q
    |||| |||| ||||||||||| ||||||||       ||||||||||||||| || ||||||||||  | ||||||||||||||||||||||||||||||    
T  22619689 catgtttgatactcaatggagctgacacactttttttacatggagaccatactagcaattataaggagtcaaattgtcaaattttgctttaaaatttgag 22619590  T
Q  213 aaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacggagggagta 278  Q
    ||| ||||||||||||  ||||         ||||||| |||||||||||||  ||||||||||||    
T  22619589 aagatcaagtattttgaaacaattttattttacaaataggtcacttattcaggaacggagggagta 22619524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 92 - 278
Target Start/End: Complemental strand, 22337897 - 22337710
Alignment:
Q  92 tgctttacgtgaagtaataagcatgcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtca 191  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||||||       |||||||||||||||||| ||||||||||| |||||||||||    
T  22337897 tgctttacgtgaagtagtaagcatgcttggcactcaatggagctgacacactttttttacatggagaccatacaagcaattataaggggtaaaattgtca 22337798  T
Q  192 aattttgctttaaaatttgagaaggtcaagtattttgggacaa-nnnnnnnnnacaaatatgtcacttattcagagacggagggagta 278  Q
    | |||||||||||||||||||||||||||||||||||||||||          ||||||| ||||||||||||| |||||||||||||    
T  22337797 atttttgctttaaaatttgagaaggtcaagtattttgggacaattttttttttacaaataggtcacttattcagggacggagggagta 22337710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 22338005 - 22337935
Alignment:
Q  16 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagtt 86  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22338005 caaattctgattgccttagttgtagtgtaaaccaacctttaatgcaccaatctaaatccttagccaaagtt 22337935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 4041062 - 4040946
Alignment:
Q  163 acaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattc 262  Q
    ||||||| ||||||||| ||||   ||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||    
T  4041062 acaagtatttataaggggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattc 4040963  T
Q  263 agagacggagggagtaa 279  Q
    |||||||||||||||||    
T  4040962 agagacggagggagtaa 4040946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 24300331 - 24300445
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||| ||||||||||||| ||||||||         ||||||| ||||||||||||     
T  24300331 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 24300430  T
Q  265 agacggagggagtaa 279  Q
    |||||||||||||||    
T  24300431 agacggagggagtaa 24300445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 25943818 - 25943943
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 249  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||    
T  25943818 acatggggaccata-aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaat 25943916  T
Q  250 atgtcacttattcagagacggagggag 276  Q
    | ||||||||||||| |||||||||||    
T  25943917 aggtcacttattcagggacggagggag 25943943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 40232302 - 40232415
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  40232302 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 40232401  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  40232402 ggacggagggagta 40232415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 29737518 - 29737405
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  29737518 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 29737419  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  29737418 ggacggagggagta 29737405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 21442985 - 21443054
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| |||||||||||||| |||||||||| | ||| ||||| ||||||||||||||||| ||||||||    
T  21442985 aagtatttataagggataaatttgtcaaattctacttaaaaatctgagaaggtcaagtattgtgggacaa 21443054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 27596272 - 27596385
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| |||||| || ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  27596272 aagtatttataaagggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 27596371  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  27596372 ggacggagggagta 27596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 31689547 - 31689653
Alignment:
Q  172 tataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgga 271  Q
    |||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| |||||||          ||||||| ||||||||||||| |||| |    
T  31689547 tataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacagatattttttacaaataggtcacttattcagggacgaa 31689646  T
Q  272 gggagta 278  Q
    |||||||    
T  31689647 gggagta 31689653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 6392384 - 6392315
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||| ||||||| ||||||||    
T  6392384 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtattgtgggacaa 6392315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 8577757 - 8577715
Alignment:
Q  191 aaattttgctttaaaatttgagaaggtcaagtattttgggaca 233  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||    
T  8577757 aaattttgcttgaaaatttgagaaggtaaagaattttgggaca 8577715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 41427835 - 41427948
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| |||| |||| ||||||||         ||||||| |||||||||| |     
T  41427835 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaaatattttttacaaataggtcacttatttaa 41427934  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  41427935 ggacggagggagta 41427948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 38276732 - 38276801
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  38276732 aagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtattgtgggacaa 38276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 31921884 - 31922140
Alignment:
Q  16 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagttctaattgctttacgtgaagtaataagcat 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| ||  | |||   |    
T  31921884 caaattctgattgccttagttgtagtgtaaaccaacctttaatgcaccaatctaaatccttagccaaagtt-tgattgctttacgttaaccactaa---t 31921979  T
Q  116 gcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaag 215  Q
    ||   || |||||||||| ||||||||       |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  31921980 gc---actctcaatggagctgacacactttttttacatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgagaag 31922076  T
Q  216 gtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacggagggagtaa 279  Q
    |||||||||||||||||||         |||||||||||||||||| || ||||||| ||||||    
T  31922077 gtcaagtattttgggacaatttttttttacaaatatgtcacttatttagggacggagagagtaa 31922140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 25898591 - 25898461
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 249  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||         ||||||    
T  25898591 acatggagaccatacaagcaattataaggagtaaaattatcaaattttgctttaaaatttgagaaggtcgagtattttgggataatttttttttacaaat 25898492  T
Q  250 atgtcacttattcagagacggagggagtaag 280  Q
    | ||||||||||||| |||||||||||||||    
T  25898491 aggtcacttattcagggacggagggagtaag 25898461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 4828276 - 4828389
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| |||| ||||||||||||||||  ||||||||||||||||| |||| ||||||||         |||||||||||||||||| ||    
T  4828276 aagtatttataaggggtaaatttgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaatattttttacaaatatgtcacttattgag 4828375  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  4828376 ggacggagggagta 4828389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 45080605 - 45080718
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  45080605 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 45080704  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  45080705 ggacggagggagta 45080718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 2110333 - 2110219
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  2110333 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 2110234  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  2110233 ggacggagggagtaa 2110219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 16964929 - 16964862
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac 232  Q
    ||||| ||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  16964929 aagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtattgtgggac 16964862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 43370787 - 43370673
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  43370787 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 43370688  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  43370687 ggacggagggagtaa 43370673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 29194101 - 29193988
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| |||||||          ||||||| |||||||||||||    
T  29194101 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacacattttttttacaaataggtcacttattcag 29194002  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  29194001 ggacggagggagta 29193988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 42847094 - 42847163
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| |||| |||||||||| ||||| ||||| ||| ||||||||||||| ||||||||    
T  42847094 aagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgaaaaggtcaagtattatgggacaa 42847163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 8381503 - 8381572
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  |||||||||||  ||  |||||||||||||||||||||  ||||||||    
T  8381503 aagtatttataaggggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtatcgtgggacaa 8381572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 96 - 278
Target Start/End: Complemental strand, 30459988 - 30459806
Alignment:
Q  96 ttacgtgaagtaataagcatgcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtcaaatt 195  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||       |||||||||||||||||| ||||||||||| |||||||||||||||    
T  30459988 ttacgtgaagtagtaagcatgcttggcactcaatggagctgacacactttttttacatggagaccatacaagcaattataaggggtaaaattgtcaaatt 30459889  T
Q  196 ttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacggagggagta 278  Q
    ||||||||||||||||||||||||||||||| |||||||         ||||||| ||||||||||||| |||||||||||||    
T  30459888 ttgctttaaaatttgagaaggtcaagtatttagggacaatttttttttacaaataggtcacttattcagggacggagggagta 30459806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 30462705 - 30462623
Alignment:
Q  16 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagttctaattgctttac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  30462705 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatccttagccaaagtt-tgattgctttac 30462623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 48169837 - 48169724
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  48169837 aagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 48169738  T
Q  265 agacggagggagta 278  Q
    ||||||||||||||    
T  48169737 agacggagggagta 48169724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 50676588 - 50676475
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  50676588 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 50676489  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  50676488 ggacggagggagta 50676475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 12568195 - 12568309
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| |||||| |||||||||| ||||||||         |||||||||||||||||||||    
T  12568195 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 12568294  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  12568295 ggacggagggagtaa 12568309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 13544659 - 13544773
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| |||||| |||||||||| ||||||||         |||||||||||||||||||||    
T  13544659 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 13544758  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  13544759 ggacggagggagtaa 13544773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 54014350 - 54014236
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  54014350 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 54014251  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  54014250 ggacggagggagtaa 54014236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 41346160 - 41346047
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  41346160 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 41346061  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  41346060 ggacggagggagta 41346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 51545775 - 51545661
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  51545775 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 51545676  T
Q  265 agacggagggagtaa 279  Q
      |||||||||||||    
T  51545675 gaacggagggagtaa 51545661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 40496886 - 40496773
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||| ||  |||| ||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  40496886 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 40496787  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  40496786 ggacggagggagta 40496773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 24709123 - 24709054
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| |||||| |||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  24709123 aagtatttataaaggataaatctgtcaaattttgcttataaatctgagaaggtcaagtattgtgggacaa 24709054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 41346314 - 41346347
Alignment:
Q  245 caaatatgtcacttattcagagacggagggagta 278  Q
    |||||||||||||||||||| |||||||||||||    
T  41346314 caaatatgtcacttattcagggacggagggagta 41346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 109 - 279
Target Start/End: Complemental strand, 33403363 - 33403193
Alignment:
Q  109 taagcatgcttgacactcaatggagttgacacacnnnnnnnacatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatt 208  Q
    |||||||||||| |||||||||||| || |||||       |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  33403363 taagcatgcttggcactcaatggagctgtcacactttttttacatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatt 33403264  T
Q  209 tgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacggagggagtaa 279  Q
    ||||||||||||||||||| ||||||         |||||||  |||||||||||| ||||||||||||||    
T  33403263 tgagaaggtcaagtattttaggacaatttttttttacaaatagatcacttattcagggacggagggagtaa 33403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 150 - 278
Target Start/End: Original strand, 36768761 - 36768889
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 249  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||         | ||||    
T  36768761 acatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgataaggtcgagtattttgggacaatttttttaaaaaaat 36768860  T
Q  250 atgtcacttattcagagacggagggagta 278  Q
    | ||||||||||||| |||||||||||||    
T  36768861 aggtcacttattcagggacggagggagta 36768889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 5712354 - 5712270
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    |||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  5712354 acatggagaccatacaagcaattataaagggtgaaattgtcaaattttgctttaaaatttgagaaggtcaattattttaggacaa 5712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 36768144 - 36768221
Alignment:
Q  23 tgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagttctaattgctttacgt 101  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  36768144 tgattggcttagttgtagtgtaaaccaacctttaatgcatcaatctaaatccttagccaaagtt-tgattgctttacgt 36768221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 36982299 - 36982185
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  36982299 aagtatttataaggggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 36982200  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  36982199 ggacggagggagtaa 36982185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 14044169 - 14044055
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| |||||||||||| |||| ||||||||         ||||||| |||||||||||||    
T  14044169 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatattatgggacaaatattttttacaaataggtcacttattcag 14044070  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  14044069 ggacggagggagtaa 14044055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 42897561 - 42897630
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  42897561 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaa 42897630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 2970851 - 2970920
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||| ||| |||| |||||||||| |||||  ||||||||||| |||||||||| ||||||||    
T  2970851 aagtatttatacggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtattgtgggacaa 2970920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 11147728 - 11147658
Alignment:
Q  16 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatcctaagccaaagtt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11147728 caaattctgattggcttagttgtagtgtaaaccaacctttaatgcaccaatctaaatctttagccaaagtt 11147658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 11146897 - 11146820
Alignment:
Q  150 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttg 228  Q
    |||||||| ||||||||| ||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11146897 acatggag-ccatacaagcaattataaggagtaaaattgtcaaattttgttttaaaatttgataaggtcaagtattttg 11146820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 18575141 - 18575027
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||| |||||| ||||||||||||||||  |||| |||||||||| |||||| ||||||||         ||||||| |||||||||||||    
T  18575141 aagtatttataagagataaatttgtcaaattttgcttagaaatctgagaaggtcgagtattgtgggacaatttttttttacaaataggtcacttattcag 18575042  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  18575041 ggacggagggagtaa 18575027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 27820886 - 27820773
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  27820886 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 27820787  T
Q  265 agacggagggagta 278  Q
     ||| |||||||||    
T  27820786 ggacagagggagta 27820773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 11254613 - 11254500
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| |||||| || ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  11254613 aagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcag 11254514  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  11254513 ggacggagggagta 11254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 39907023 - 39906954
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  39907023 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaa 39906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 9753877 - 9753814
Alignment:
Q  171 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||||| | |||| |||||||||| |||||  |||||||||||||||||||||| ||||||||    
T  9753877 ttataagaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtattatgggacaa 9753814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 38070082 - 38070196
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| |||||| || ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  38070082 aagtatttataatgggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 38070181  T
Q  265 agacggagggagtaa 279  Q
     ||| ||||||||||    
T  38070182 ggacagagggagtaa 38070196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 17493639 - 17493526
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||| ||  |||| ||||||| ||||||||| ||||||||         ||||||| |||||||||||||    
T  17493639 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcag 17493540  T
Q  265 agacggagggagta 278  Q
     |||||||| ||||    
T  17493539 ggacggaggaagta 17493526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 12738559 - 12738622
Alignment:
Q  171 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  12738559 ttataaggggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtattatgggacaa 12738622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 17336157 - 17336226
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| | ||||||||||||||| ||||||||    
T  17336157 aagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatgggacaa 17336226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 13243733 - 13243793
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 225  Q
    ||||| ||||||||| | || |||||||||| |||||  ||||||||||||||||| ||||    
T  13243733 aagtatttataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatatt 13243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 46371040 - 46370926
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| |||| ||||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  46371040 aagtatttataaggggtaaatttgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 46370941  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  46370940 ggacggagggagtaa 46370926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 46862669 - 46862555
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  46862669 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 46862570  T
Q  265 agacggagggagtaa 279  Q
     ||||||||||||||    
T  46862569 ggacggagggagtaa 46862555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 28036888 - 28037001
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||| ||||| ||    
T  28036888 aagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcatttattaag 28036987  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  28036988 ggacggagggagta 28037001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 1929409 - 1929516
Alignment:
Q  171 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgg 270  Q
    ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||| || |||||    
T  1929409 ttataaggggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttatttagggacgg 1929508  T
Q  271 agggagta 278  Q
    ||||||||    
T  1929509 agggagta 1929516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 39151084 - 39151197
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  39151084 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 39151183  T
Q  265 agacggagggagta 278  Q
     ||||||| |||||    
T  39151184 ggacggagagagta 39151197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 50777110 - 50776997
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||| ||||||||||||||| ||||||||         ||||||| |||||||||| ||    
T  50777110 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtattatgggacaaatattttttacaaataagtcacttatttag 50777011  T
Q  265 agacggagggagta 278  Q
    ||||| || |||||    
T  50777010 agacgaagagagta 50776997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 8229176 - 8229063
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| |||| |||||||||||||||| ||||| | ||||||| |||||||  || ||||         | ||||| |||||||||||||    
T  8229176 aagtatttataaggggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtattgaggaacaaatattttttataaataggtcacttattcag 8229077  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  8229076 ggacggagggagta 8229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 32045946 - 32045833
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  | |||||||||||||  |||| ||||||||||||||||| ||| ||||         |||||||  ||||||||||||    
T  32045946 aagtatttataaggggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtattgtggaacaaatattttttacaaatagatcacttattcag 32045847  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  32045846 ggacggagggagta 32045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 38321758 - 38321645
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  | | |||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||| ||||||||    
T  38321758 aagtatttataagggttaaatcttttaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcagttattcag 38321659  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  38321658 ggacggagggagta 38321645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 38817887 - 38817818
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| |||| || |||||||||||||  ||||||||||| ||||| |||| ||||||||    
T  38817887 aagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatattatgggacaa 38817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 1929250 - 1929216
Alignment:
Q  245 caaatatgtcacttattcagagacggagggagtaa 279  Q
    |||||||||||||||||||| ||||||||||||||    
T  1929250 caaatatgtcacttattcagggacggagggagtaa 1929216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 69866 - 69753
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         |||||||||||||||||||||    
T  69866 aagtatttataagcggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 69767  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  69766 ggacggagggagta 69753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 16470 - 16357
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| |||||| || ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  16470 aagtatttataaagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 16371  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  16370 ggacggagggagta 16357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 13042085 - 13041972
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  13042085 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 13041986  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  13041985 ggacggagggagta 13041972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 12350378 - 12350271
Alignment:
Q  172 tataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgga 271  Q
    |||||||| ||||  |||||||||||||||  ||||||||||||||||| |||| ||||||||         ||||||| ||||||||||||||||||||    
T  12350378 tataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaatactttttacaaataggtcacttattcagagacgga 12350279  T
Q  272 gggagtaa 279  Q
    || |||||    
T  12350278 ggaagtaa 12350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 28541774 - 28541887
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||| ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||| ||         ||||||| |||||||||||||    
T  28541774 aagtatttataaggggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggataaatattttttacaaataagtcacttattcag 28541873  T
Q  265 agacggagggagta 278  Q
    ||||||||||||||    
T  28541874 agacggagggagta 28541887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 31833752 - 31833821
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| || ||||||||||| |||||||||| ||||| ||||| ||||||||||||||||  ||||||||    
T  31833752 aagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtatcgtgggacaa 31833821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 1870647 - 1870587
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 225  Q
    ||||| ||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||||    
T  1870647 aagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtatt 1870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 1241222 - 1241109
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| ||||||| ||||||||| ||||||||         |||||||  ||||||||||||    
T  1241222 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtattgtgggacaaatattttttacaaatagatcacttattcag 1241123  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  1241122 ggacggagggagta 1241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 13210451 - 13210397
Alignment:
Q  171 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 225  Q
    |||||| || |||| |||||||||| ||||| |||||||||||||||||||||||    
T  13210451 ttataatgggtaaatttgtcaaattctgcttaaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 16435892 - 16435823
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||| ||| ||||  ||||||||||| |||  |||||||||||||||||||||| ||||||||    
T  16435892 aagtatttatatggggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtattgtgggacaa 16435823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 7271265 - 7271334
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| | ||||||||||||||| ||||||||    
T  7271265 aagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatgggacaa 7271334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 30736532 - 30736463
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| |||| |||| ||||||||    
T  30736532 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaa 30736463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 10204 - 10317
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         |||||||  ||||||||||||    
T  10204 aagtatttataagggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaatagatcacttattcag 10303  T
Q  265 agacggagggagta 278  Q
      ||||||||||||    
T  10304 gaacggagggagta 10317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 10780 - 10893
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 264  Q
    ||||| |||||| || ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  10780 aagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcag 10879  T
Q  265 agacggagggagta 278  Q
     |||||||||||||    
T  10880 ggacggagggagta 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 3927 - 3858
Alignment:
Q  165 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 234  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  3927 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaa 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University