View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19142_high_8 (Length: 251)
Name: NF19142_high_8
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19142_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 298740 - 298912
Alignment:
| Q |
52 |
acaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagc |
151 |
Q |
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| T |
298740 |
acaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagc |
298839 |
T |
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| Q |
152 |
cattgagtctctacggttagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctgtg |
224 |
Q |
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| T |
298840 |
cattgagtctctacggctagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctgtg |
298912 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 301033 - 301067
Alignment:
| Q |
187 |
ggtgataagctagagactgcaatttcaattggtct |
221 |
Q |
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| T |
301033 |
ggtgataagctagagactgcaatttcaattggtct |
301067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 300975 - 301034
Alignment:
| Q |
78 |
tgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagaggg |
139 |
Q |
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| T |
300975 |
tgtagaattcaaactaaacctacttggggcaactggagtt--gaggacaagatgcaagaggg |
301034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 27465609 - 27465478
Alignment:
| Q |
55 |
aaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagccat |
154 |
Q |
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| T |
27465609 |
aaactacgtcaaacagcagctcttatagaatgcaatttaaatctacttggagcaactggaattgag--gacaagctgcaagagggtgtaccagaagccat |
27465512 |
T |
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| Q |
155 |
tgagtctctacggttagctggaattaaggtctgg |
188 |
Q |
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| T |
27465511 |
tgagtccctacggcaagctggaatcaaggtctgg |
27465478 |
T |
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