View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19142_low_1 (Length: 702)
Name: NF19142_low_1
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19142_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 44154235 - 44153611
Alignment:
| Q |
1 |
ttattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttttttctgatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44154235 |
ttattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattactgttttttctgatt |
44154136 |
T |
|
| Q |
101 |
taaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacgacatttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44154135 |
taaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgattgatgcatttacagaaaatgaagaagattttgacgactacgacatttcaa |
44154036 |
T |
|
| Q |
201 |
actggaaaatcaaaggtatcagtgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaatt |
300 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44154035 |
actggaaaatcaaaggtattattgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaactgtgtgcatgtctttaatttgaatt |
44153936 |
T |
|
| Q |
301 |
ttatttgaaatggaaactcaaagagagattttcggtcgttattattgttctttctgattgatttcatttgcttaatttactaataataacgtttcttcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44153935 |
ttatttgaaatggaaactcaaagagagattttcggtcgttattattgttcttcctgattgatttcatttgcttaatttactaataataacgtttcttaat |
44153836 |
T |
|
| Q |
401 |
tatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaagacaaaattttctgatg |
500 |
Q |
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| T |
44153835 |
tatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaagacaaaattttctgatg |
44153736 |
T |
|
| Q |
501 |
gagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccctggggtannnnnnnnnnnnctgatttcatttgtttcagatttaagat |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
44153735 |
gagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccccggggtatttttgttttttctgatttcatttgtttcagatttaagat |
44153636 |
T |
|
| Q |
601 |
tgtttcattatgattagttaaattc |
625 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
44153635 |
tgtttcattatgattagttaaattc |
44153611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 40898960 - 40898330
Alignment:
| Q |
1 |
ttattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttttttctgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40898960 |
ttattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacagctatgatgagcgggatgaagaatttggtattattgttttttctgatt |
40898861 |
T |
|
| Q |
101 |
taaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacgacatttcaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40898860 |
taaggatgtttcttcatgtgtttagaatgtgtctggtaattattattgattgatacatttacagaaaatgaagaagattttgacgactacgacatttcat |
40898761 |
T |
|
| Q |
201 |
actggaaaatcaaaggtatcagtgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaatt |
300 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40898760 |
actggaaaatcaaaggtattattgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaatt |
40898661 |
T |
|
| Q |
301 |
ttatttgaaatggaaactcaaagagagattttcggtcgttattattgttctttctgattgatttcatttgct--------taatttactaataataacgt |
392 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40898660 |
ttatttgaaatggaaactc--agagagattttcggttgttattattgttctttctgattgatttcatttgcttaatttactaatttactaataataacgt |
40898563 |
T |
|
| Q |
393 |
ttcttcattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaagacaaaatt |
492 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40898562 |
ttcttcattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaaggcgataaagacaaaatt |
40898463 |
T |
|
| Q |
493 |
ttctgatggagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccctggggtannnnnnnnnnnnctgatttcatttgtttcaga |
592 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| || |
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| T |
40898462 |
ttctgatggagatttcatcctccaagcattcgaggagaccatgctcaaacgacgtgtccccgggggtattattgttctttctgatttcatttgtttcgga |
40898363 |
T |
|
| Q |
593 |
tttaagattgtttcattatgattagttaaattc |
625 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |
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| T |
40898362 |
tttaagattgtttcattttgattagttcaattc |
40898330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 628 - 688
Target Start/End: Complemental strand, 44153575 - 44153515
Alignment:
| Q |
628 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggagg |
688 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153575 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggagg |
44153515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 631 - 688
Target Start/End: Complemental strand, 40898301 - 40898244
Alignment:
| Q |
631 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggagg |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40898301 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggagg |
40898244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 628 - 688
Target Start/End: Original strand, 40894720 - 40894780
Alignment:
| Q |
628 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggagg |
688 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40894720 |
tgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggagg |
40894780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 40894632 - 40894684
Alignment:
| Q |
573 |
ctgatttcatttgtttcagatttaagattgtttcattatgattagttaaattc |
625 |
Q |
| |
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||||||| ||||||||||||||||| | |||||||| |||||||||| ||||| |
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| T |
40894632 |
ctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattc |
40894684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 40894651 - 40894711
Alignment:
| Q |
239 |
atttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaat |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| |
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|
| T |
40894651 |
atttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaat |
40894711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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