View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19142_low_10 (Length: 235)

Name: NF19142_low_10
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19142_low_10
NF19142_low_10
[»] scaffold0145 (1 HSPs)
scaffold0145 (1-229)||(12552-12780)
[»] chr4 (4 HSPs)
chr4 (1-229)||(16284937-16285165)
chr4 (72-229)||(18231449-18231604)
chr4 (72-228)||(11555916-11556070)
chr4 (102-215)||(11098355-11098468)
[»] chr6 (4 HSPs)
chr6 (1-229)||(10641221-10641449)
chr6 (3-229)||(14970060-14970288)
chr6 (74-229)||(10906699-10906854)
chr6 (72-188)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (72-228)||(22614701-22614857)
chr7 (72-229)||(11655474-11655631)
chr7 (1-229)||(20025970-20026198)
chr7 (114-215)||(13477489-13477596)
chr7 (1-173)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (1-229)||(24831927-24832161)
chr5 (78-213)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (1-229)||(14481527-14481761)
chr3 (13-163)||(17790941-17791091)
chr3 (13-163)||(19099381-19099531)
chr3 (79-139)||(22159871-22159931)
chr3 (79-139)||(21975275-21975335)
chr3 (79-139)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (1-216)||(44586360-44586574)
chr2 (78-163)||(16862347-16862432)
chr2 (1-105)||(24786268-24786372)
[»] scaffold1001 (1 HSPs)
scaffold1001 (72-229)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (78-191)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 12780 - 12552
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12780 atgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatgataa 12681  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12680 agagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttat 12581  T
Q  201 attataataatgatgagaatgatgatgtc 229  Q
    |||||||||||||||||||||||||||||    
T  12580 attataataatgatgagaatgatgatgtc 12552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16284937 - 16285165
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  16284937 atgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatgataa 16285036  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16285037 agagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttat 16285136  T
Q  201 attataataatgatgagaatgatgatgtc 229  Q
    |||||||||||||||||||||||||||||    
T  16285137 attataataatgatgagaatgatgatgtc 16285165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  18231449 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa 18231546  T
Q  172 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 229  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||| ||||||    
T  18231547 attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc 18231604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 228
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    ||||||||||||||||||  || ||||| ||||||||||||  || ||| ||| || | ||| ||||| ||||||| |||||||||||||||||||||||    
T  11556070 gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa 11555973  T
Q  172 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 228  Q
    ||||||||||| ||||||| |||  || ||||||||||||||||||||||| |||||    
T  11555972 attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt 11555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
Q  102 gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta 201  Q
    ||||||||||| |||||||||||| | |||  |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||| ||||  || ||    
T  11098355 gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata 11098454  T
Q  202 ttataataatgatg 215  Q
    ||||||||||||||    
T  11098455 ttataataatgatg 11098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10641221 - 10641449
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    ||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| ||   ||||||||||||||||||||||||||||     
T  10641221 atgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatgatag 10641320  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 200  Q
    |||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  10641321 agagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgaggttat 10641420  T
Q  201 attataataatgatgagaatgatgatgtc 229  Q
    |||||||||||||||||||||||||||||    
T  10641421 attataataatgatgagaatgatgatgtc 10641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 14970288 - 14970060
Alignment:
Q  3 gaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaag 102  Q
    ||||| |||||||||||||| | |||||    ||||||||||||| ||||| ||||||| ||| ||   ||||| ||||||||||||  |||||||| ||    
T  14970288 gaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatgatagag 14970189  T
Q  103 agtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatgagtttgt 200  Q
    |||||||||| ||||||||| |||| | ||| ||| | ||||||  |||||||||||  |||| || |||||||||  ||||||||||||||||  || |    
T  14970188 agtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatgatgttat 14970089  T
Q  201 attataataatgatgagaatgatgatgtc 229  Q
    ||||||||||  |||||||||| ||||||    
T  14970088 attataataacaatgagaatgacgatgtc 14970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
Q  74 taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 173  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||| ||||||||||   ||||||||| | |  |  ||||||||| ||||||| || | ||    
T  10906699 taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat 10906798  T
Q  174 tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 229  Q
     | || |||| ||||||||||  || ||||||||||||||||||||||| ||||||    
T  10906799 aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc 10906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || ||    
T  9191181 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa 9191082  T
Q  172 attactacgatgggaaa 188  Q
    || | ||||||| ||||    
T  9191081 ataaatacgatgagaaa 9191065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  22614701 gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa 22614800  T
Q  172 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 228  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  22614801 attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt 22614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || |||||||||||||||||||||||    
T  11655631 gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa 11655532  T
Q  172 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 229  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||    
T  11655531 attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc 11655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20026198 - 20025970
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    ||||||| ||||||| |||||| |||||||  | |  ||||||||||||||||||||| || ||| ||   |||||||| ||||||||| |  ||||||     
T  20026198 atgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgatag 20026099  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgt 200  Q
    ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| |||||||||  || |    
T  20026098 agaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgttat 20025999  T
Q  201 attataataatgatgagaatgatgatgtc 229  Q
    ||||||||||  |||| ||||||||||||    
T  20025998 attataataacaatgacaatgatgatgtc 20025970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
Q  114 ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa 207  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||      |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  13477489 ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa 13477588  T
Q  208 taatgatg 215  Q
    ||||||||    
T  13477589 taatgatg 13477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 99  Q
    ||||||| |||||||||||| | || |||| || || || ||||||||| ||||||  |||| ||| ||   |||||||||||||||||| ||| |||||    
T  4531649 atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata 4531748  T
Q  100 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 173  Q
     |||||||||||| ||| ||| |||| | | ||  ||||| ||||| | | |||||||||||||||||| ||||    
T  4531749 gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat 4531820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24831927 - 24832161
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| ||   |||| | ||||||| |||||||||||||     
T  24831927 atgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgatag 24832026  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatgatga 194  Q
    |||||||||||| |||||||||||| | | ||| ||||| |||| || |||||||||      |||||||||||||||||||||||||| ||||||||||    
T  24832027 agagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatgatga 24832126  T
Q  195 gtttgtattataataatgatgagaatgatgatgtc 229  Q
    | || || ||||||| |||||||||||| ||||||    
T  24832127 ggttatactataatattgatgagaatgacgatgtc 24832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
Q  78 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 177  Q
    |||||||||||| ||| ||||| |||||||||||  ||| |||||||||  | ||| ||||| ||||| | | ||| ||||| ||||||||  ||| | |    
T  13935849 gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat 13935750  T
Q  178 acgatgggaaatgatgagtttgtattataataatga 213  Q
    ||||| |||||| ||||  || ||||||||||||||    
T  13935749 acgat-ggaaataatgatgttatattataataatga 13935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 14481527 - 14481761
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| ||   ||||   ||||||| |||||||||||||     
T  14481527 atgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatgatag 14481626  T
Q  101 agagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatgatga 194  Q
    |||||||||||| |||||||||||||| | ||| ||||| |||| || ||||||      |||||||||||||||||||||||||||||||| |||||||    
T  14481627 agagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatgatga 14481726  T
Q  195 gtttgtattataataatgatgagaatgatgatgtc 229  Q
    | || || ||||||| ||||||| |||| ||||||    
T  14481727 ggttatactataatattgatgaggatgacgatgtc 14481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
Q  13 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 112  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  17791091 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 17790992  T
Q  113 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 163  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  17790991 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 17790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
Q  13 ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg 112  Q
    ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | ||||||||||||    
T  19099531 ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg 19099432  T
Q  113 gggagtcctataactataacagagagtaatgacgagtaatattatatatat 163  Q
     |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  19099431 aggagtcctataactttgacagagagtgatgatgattaatattatatatat 19099381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
Q  79 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 139  Q
    ||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| |||||    
T  22159931 tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt 22159871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
Q  79 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 139  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21975335 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
Q  79 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 139  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21997766 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 99  Q
    ||||||| | |||||||||| | |||||||  ||||||| ||||||| ||||||||  |||| |||  |   |||||||||||||||||| ||| |||||    
T  44586360 atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata 44586459  T
Q  100 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg 199  Q
     |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||  ||||||||||  ||     
T  44586460 gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta 44586557  T
Q  200 tattataataatgatga 216  Q
     ||||||||||| ||||    
T  44586558 aattataataataatga 44586574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
Q  78 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 163  Q
    ||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || ||   || || |||||||||||||||    
T  16862432 gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat 16862347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24786372 - 24786268
Alignment:
Q  1 atgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataa 100  Q
    ||||||| |||||||||||||| |||||||  | |||||| |||||| |||||||| | || ||| || | || ||||||  ||||||| || ||||||     
T  24786372 atgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatgatag 24786273  T
Q  101 agagt 105  Q
    |||||    
T  24786272 agagt 24786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
Q  72 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 171  Q
    ||||| ||| ||| ||| |||||||||| |||||| | ||| |||||||||||||  | | ||||||| ||||| | ||||||| ||||| || ||| ||    
T  1545 gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa 1447  T
Q  172 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 229  Q
    ||||| || |||| |||||||||| || ||||||||||||||||||||||| ||||||    
T  1446 attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
Q  78 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 177  Q
    |||||||||||| |||  |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | |    
T  1567041 gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat 1567140  T
Q  178 acgatgggaaatga 191  Q
    |||||| |||||||    
T  1567141 acgatgagaaatga 1567154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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